diff --git a/.github/workflows/quast.yml b/.github/workflows/quast.yml index 7030d638..669d916b 100644 --- a/.github/workflows/quast.yml +++ b/.github/workflows/quast.yml @@ -37,4 +37,4 @@ jobs: run: python -m pip install --upgrade pip pytest-workflow # Test the module - - run: pytest --tag quest --symlink --wt 2 + - run: pytest --tag quast --symlink --wt 2 diff --git a/software/quast/quast_noref/meta.yml b/software/quast/quast_noref/meta.yml index 9b46bf42..8f758b10 100644 --- a/software/quast/quast_noref/meta.yml +++ b/software/quast/quast_noref/meta.yml @@ -5,9 +5,9 @@ keywords: - assembly - quality tools: - - star: + - quast: description: | - QUAST calculate quality metrics for genome assemblies + QUAST calculates quality metrics for genome assemblies homepage: http://bioinf.spbau.ru/quast doi: params: @@ -34,15 +34,16 @@ params: input: - consensus: - type: map + type: file description: | - Groovy Map containing sample information + Fasta file containing the assembly of interest output: - - report: + - results: type: file description: The lineage report pattern: "{prefix}.lineage_report.csv" + - tsv: - version: type: file diff --git a/software/quast/quast_ref/meta.yml b/software/quast/quast_ref/meta.yml index a1ca27b3..03526be7 100644 --- a/software/quast/quast_ref/meta.yml +++ b/software/quast/quast_ref/meta.yml @@ -1,13 +1,13 @@ -name: quast +name: quast_reference description: Quality Assessment Tool for Genome Assemblies keywords: - quast - assembly - quality tools: - - star: + - quast: description: | - QUAST calculate quality metrics for genome assemblies + QUAST calculates quality metrics for genome assemblies homepage: http://bioinf.spbau.ru/quast doi: params: @@ -34,9 +34,9 @@ params: input: - consensus: - type: map + type: file description: | - Groovy Map containing sample information + Fasta file containing the assembly of interest - fasta: type: file description: | @@ -46,10 +46,11 @@ input: description: The genome GFF file output: - - report: - type: file - description: The lineage report + - quast: + type: directory + description: Directory containing complete quast report pattern: "{prefix}.lineage_report.csv" + - report: - version: type: file