diff --git a/modules/merquryfk/merquryfk/main.nf b/modules/merquryfk/merquryfk/main.nf
index f02f63ce..f74f1abf 100644
--- a/modules/merquryfk/merquryfk/main.nf
+++ b/modules/merquryfk/merquryfk/main.nf
@@ -6,7 +6,7 @@ process MERQURYFK_MERQURYFK {
         error "Conda environments cannot be used when using the FastK tool. Please use docker or singularity containers."
     }
     // WARN: Version information not provided by tool on CLI. Please update version string below when bumping container versions.
-    container 'ghcr.io/nbisweden/fastk_genescopefk_merquryfk:1.0'
+    container 'ghcr.io/nbisweden/fastk_genescopefk_merquryfk:1.2'
 
     input:
     tuple val(meta), path(fastk_hist), path(fastk_ktab), path(assembly)
@@ -37,7 +37,7 @@ process MERQURYFK_MERQURYFK {
     def args = task.ext.args ?: ''
     prefix = task.ext.prefix ?: "${meta.id}"
     def FASTK_VERSION = 'f18a4e6d2207539f7b84461daebc54530a9559b0' // WARN: Version information not provided by tool on CLI. Please update this string when bumping container versions.
-    def MERQURY_VERSION = '8f3ab706e4cf4d7b7d1dfe5739859e3ebd26c494' // WARN: Version information not provided by tool on CLI. Please update this string when bumping container versions.
+    def MERQURY_VERSION = '8ae344092df5dcaf83cfb7f90f662597a9b1fc61' // WARN: Version information not provided by tool on CLI. Please update this string when bumping container versions.
     """
     MerquryFK \\
         $args \\