diff --git a/modules/bowtie2/align/main.nf b/modules/bowtie2/align/main.nf index b7334614..6d65aa50 100644 --- a/modules/bowtie2/align/main.nf +++ b/modules/bowtie2/align/main.nf @@ -42,7 +42,7 @@ process BOWTIE2_ALIGN { """ INDEX=`find -L ./ -name "*.rev.1.bt2" | sed "s/.rev.1.bt2//"` [ -z "\$INDEX" ] && INDEX=`find -L ./ -name "*.rev.1.bt2l" | sed "s/.rev.1.bt2l//"` - [ -z "\$INDEX" ] && echo "BT2 index files not found" 1>&2 && exit 1 + [ -z "\$INDEX" ] && echo "Bowtie2 index files not found" 1>&2 && exit 1 bowtie2 \\ -x \$INDEX \\