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test fix

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This commit is contained in:
Piotr Faba 2020-03-06 14:34:34 +00:00
parent f33dd2d2e9
commit 977a9b3ee8
1 changed files with 7 additions and 2 deletions
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9
.github/workflows/cutadapt.yml vendored
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@ -10,8 +10,13 @@ jobs:
steps:
# Check out the repository
- uses: actions/checkout@v1
submodules: true
- uses: actions/checkout@v2
- name: Checkout submodules
shell: bash
run: |
auth_header="$(git config --local --get http.https://github.com/.extraheader)"
git submodule sync --recursive
git -c "http.extraheader=$auth_header" -c protocol.version=2 submodule update --init --force --recursive --depth=1
- name: Install Nextflow
run: |