diff --git a/modules/manta/somatic/main.nf b/modules/manta/somatic/main.nf index 886a8fb9..da2157a1 100644 --- a/modules/manta/somatic/main.nf +++ b/modules/manta/somatic/main.nf @@ -11,8 +11,7 @@ process MANTA_SOMATIC { tuple val(meta), path(input_normal), path(input_index_normal), path(input_tumor), path(input_index_tumor) path fasta path fai - path target_bed - path target_bed_tbi + tuple path(target_bed), path(target_bed_tbi) output: tuple val(meta), path("*.candidate_small_indels.vcf.gz") , emit: candidate_small_indels_vcf