From 986b72cee9efab4c4b1071a32c337d209ba22d0f Mon Sep 17 00:00:00 2001 From: JoseEspinosa Date: Sat, 30 Jan 2021 09:35:25 +0100 Subject: [PATCH] Fix error on previous commit --- software/bcftools/bgzip/meta.yml | 75 -------------------------------- software/bowtie2/align/meta.yml | 1 - 2 files changed, 76 deletions(-) delete mode 100644 software/bcftools/bgzip/meta.yml diff --git a/software/bcftools/bgzip/meta.yml b/software/bcftools/bgzip/meta.yml deleted file mode 100644 index 21424516..00000000 --- a/software/bcftools/bgzip/meta.yml +++ /dev/null @@ -1,75 +0,0 @@ -name: bcftoos_ -description: foo -keywords: - - align - - fasta - - genome - - reference -tools: - - bowtie2: - description: | - BCFtools is a set of utilities that manipulate variant calls in the - Variant Call Format (VCF) and its binary counterpart BCF. - homepage: http://samtools.github.io/bcftools/bcftools.html - documentation: http://www.htslib.org/doc/bcftools.html - doi: 10.1038/nmeth.1923 -params: - - outdir: - type: string - description: | - The pipeline's output directory. By default, the module will - output files into `$params.outdir/` - - publish_dir_mode: - type: string - description: | - Value for the Nextflow `publishDir` mode parameter. - Available: symlink, rellink, link, copy, copyNoFollow, move. - - enable_conda: - type: boolean - description: | - Run the module with Conda using the software specified - via the `conda` directive - - singularity_pull_docker_container: - type: boolean - description: | - Instead of directly downloading Singularity images for use with Singularity, - force the workflow to pull and convert Docker containers instead. - - save_unaligned: - type: boolean - description: Save unaligned reads -input: - - meta: - type: map - description: | - Groovy Map containing sample information - e.g. [ id:'test', single_end:false ] - - reads: - type: file - description: | - List of input FastQ files of size 1 and 2 for single-end and paired-end data, - respectively. - - index: - type: file - description: Bowtie2 genome index files - pattern: "*.ebwt" -output: - - bam: - type: file - description: Output BAM file containing read alignments - pattern: "*.{bam}" - - version: - type: file - description: File containing software version - pattern: "*.{version.txt}" - - fastq: - type: file - description: Unaligned FastQ files - pattern: "*.fastq.gz" - - log: - type: file - description: Aligment log - pattern: "*.log" -authors: - - "@kevinmenden" - - "@joseespinosa" - - "@drpatelh" diff --git a/software/bowtie2/align/meta.yml b/software/bowtie2/align/meta.yml index 9a2ecf40..eb78e9f9 100644 --- a/software/bowtie2/align/meta.yml +++ b/software/bowtie2/align/meta.yml @@ -70,6 +70,5 @@ output: description: Aligment log pattern: "*.log" authors: - - "@kevinmenden" - "@joseespinosa" - "@drpatelh"