From 992232b340b4fe60929937a8efa40f6fc7f180ec Mon Sep 17 00:00:00 2001 From: drpatelh Date: Mon, 14 Dec 2020 00:14:28 +0000 Subject: [PATCH] Bump NF version to 20.11.0-edge --- .github/workflows/bwa_index.yml | 2 +- .github/workflows/bwa_mem.yml | 2 +- .github/workflows/fastqc.yml | 2 +- .github/workflows/multiqc.yml | 2 +- .github/workflows/picard_collectmultiplemetrics.yml | 2 +- .github/workflows/picard_markduplicates.yml | 2 +- .github/workflows/picard_mergesamfiles.yml | 2 +- .github/workflows/samtools_flagstat.yml | 2 +- .github/workflows/samtools_idxstats.yml | 2 +- .github/workflows/samtools_index.yml | 2 +- .github/workflows/samtools_sort.yml | 2 +- .github/workflows/samtools_stats.yml | 2 +- .github/workflows/trimgalore.yml | 2 +- 13 files changed, 13 insertions(+), 13 deletions(-) diff --git a/.github/workflows/bwa_index.yml b/.github/workflows/bwa_index.yml index aa0c3ba3..06659057 100644 --- a/.github/workflows/bwa_index.yml +++ b/.github/workflows/bwa_index.yml @@ -16,7 +16,7 @@ jobs: runs-on: ubuntu-latest strategy: matrix: - nxf_version: [20.07.1, ""] + nxf_version: [20.11.0-edge] env: NXF_ANSI_LOG: false steps: diff --git a/.github/workflows/bwa_mem.yml b/.github/workflows/bwa_mem.yml index d24b3fce..69b737af 100644 --- a/.github/workflows/bwa_mem.yml +++ b/.github/workflows/bwa_mem.yml @@ -16,7 +16,7 @@ jobs: runs-on: ubuntu-latest strategy: matrix: - nxf_version: [20.07.1, ""] + nxf_version: [20.11.0-edge] env: NXF_ANSI_LOG: false steps: diff --git a/.github/workflows/fastqc.yml b/.github/workflows/fastqc.yml index 6e98cb9c..3de0b9a7 100644 --- a/.github/workflows/fastqc.yml +++ b/.github/workflows/fastqc.yml @@ -16,7 +16,7 @@ jobs: runs-on: ubuntu-latest strategy: matrix: - nxf_version: [20.07.1, ""] + nxf_version: [20.11.0-edge] env: NXF_ANSI_LOG: false steps: diff --git a/.github/workflows/multiqc.yml b/.github/workflows/multiqc.yml index 3ddc4be3..ea6466ab 100644 --- a/.github/workflows/multiqc.yml +++ b/.github/workflows/multiqc.yml @@ -16,7 +16,7 @@ jobs: runs-on: ubuntu-latest strategy: matrix: - nxf_version: [20.07.1, ""] + nxf_version: [20.11.0-edge] env: NXF_ANSI_LOG: false steps: diff --git a/.github/workflows/picard_collectmultiplemetrics.yml b/.github/workflows/picard_collectmultiplemetrics.yml index 871e9937..37c0d5a1 100644 --- a/.github/workflows/picard_collectmultiplemetrics.yml +++ b/.github/workflows/picard_collectmultiplemetrics.yml @@ -16,7 +16,7 @@ jobs: runs-on: ubuntu-latest strategy: matrix: - nxf_version: [20.07.1, ""] + nxf_version: [20.11.0-edge] env: NXF_ANSI_LOG: false steps: diff --git a/.github/workflows/picard_markduplicates.yml b/.github/workflows/picard_markduplicates.yml index ef95a19c..9334ec1f 100644 --- a/.github/workflows/picard_markduplicates.yml +++ b/.github/workflows/picard_markduplicates.yml @@ -16,7 +16,7 @@ jobs: runs-on: ubuntu-latest strategy: matrix: - nxf_version: [20.07.1, ""] + nxf_version: [20.11.0-edge] env: NXF_ANSI_LOG: false steps: diff --git a/.github/workflows/picard_mergesamfiles.yml b/.github/workflows/picard_mergesamfiles.yml index 3a2cdaa8..1ea5e20c 100644 --- a/.github/workflows/picard_mergesamfiles.yml +++ b/.github/workflows/picard_mergesamfiles.yml @@ -16,7 +16,7 @@ jobs: runs-on: ubuntu-latest strategy: matrix: - nxf_version: [20.07.1, ""] + nxf_version: [20.11.0-edge] env: NXF_ANSI_LOG: false steps: diff --git a/.github/workflows/samtools_flagstat.yml b/.github/workflows/samtools_flagstat.yml index 3c9a25da..441f66a1 100644 --- a/.github/workflows/samtools_flagstat.yml +++ b/.github/workflows/samtools_flagstat.yml @@ -16,7 +16,7 @@ jobs: runs-on: ubuntu-latest strategy: matrix: - nxf_version: [20.07.1, ""] + nxf_version: [20.11.0-edge] env: NXF_ANSI_LOG: false steps: diff --git a/.github/workflows/samtools_idxstats.yml b/.github/workflows/samtools_idxstats.yml index 7b3c7922..d2d5c49a 100644 --- a/.github/workflows/samtools_idxstats.yml +++ b/.github/workflows/samtools_idxstats.yml @@ -16,7 +16,7 @@ jobs: runs-on: ubuntu-latest strategy: matrix: - nxf_version: [20.07.1, ""] + nxf_version: [20.11.0-edge] env: NXF_ANSI_LOG: false steps: diff --git a/.github/workflows/samtools_index.yml b/.github/workflows/samtools_index.yml index 80fbdd2d..1a3cdea5 100644 --- a/.github/workflows/samtools_index.yml +++ b/.github/workflows/samtools_index.yml @@ -16,7 +16,7 @@ jobs: runs-on: ubuntu-latest strategy: matrix: - nxf_version: [20.07.1, ""] + nxf_version: [20.11.0-edge] env: NXF_ANSI_LOG: false steps: diff --git a/.github/workflows/samtools_sort.yml b/.github/workflows/samtools_sort.yml index eaa98eff..58f1fec1 100644 --- a/.github/workflows/samtools_sort.yml +++ b/.github/workflows/samtools_sort.yml @@ -16,7 +16,7 @@ jobs: runs-on: ubuntu-latest strategy: matrix: - nxf_version: [20.07.1, ""] + nxf_version: [20.11.0-edge] env: NXF_ANSI_LOG: false steps: diff --git a/.github/workflows/samtools_stats.yml b/.github/workflows/samtools_stats.yml index 5b28725e..f28f4997 100644 --- a/.github/workflows/samtools_stats.yml +++ b/.github/workflows/samtools_stats.yml @@ -16,7 +16,7 @@ jobs: runs-on: ubuntu-latest strategy: matrix: - nxf_version: [20.07.1, ""] + nxf_version: [20.11.0-edge] env: NXF_ANSI_LOG: false steps: diff --git a/.github/workflows/trimgalore.yml b/.github/workflows/trimgalore.yml index c33ecbc1..8b201e38 100644 --- a/.github/workflows/trimgalore.yml +++ b/.github/workflows/trimgalore.yml @@ -16,7 +16,7 @@ jobs: runs-on: ubuntu-latest strategy: matrix: - nxf_version: [20.07.1, ""] + nxf_version: [20.11.0-edge] env: NXF_ANSI_LOG: false steps: