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add stub

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This commit is contained in:
Ramprasad Neethiraj 2022-05-20 17:10:09 +02:00
parent 635edc0022
commit 995bf88327
2 changed files with 26 additions and 2 deletions
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17
tests/modules/bcftools/roh/main.nf
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@ -6,7 +6,22 @@ include { BCFTOOLS_ROH } from '../../../../modules/bcftools/roh/main.nf'
workflow test_bcftools_roh { workflow test_bcftools_roh {
input = [ [ id:'out' ], // meta map input = [ [ id:'test' ], // meta map
file(params.test_data['sarscov2']['illumina']['test_vcf_gz'], checkIfExists: true),
file(params.test_data['sarscov2']['illumina']['test_vcf_gz_tbi'], checkIfExists: true)]
af_file = []
gen_map = []
regions = []
targets = []
samples = []
BCFTOOLS_ROH ( input, af_file, gen_map, regions, samples, targets )
}
workflow test_bcftools_roh_stub {
input = [ [ id:'test' ], // meta map
file(params.test_data['sarscov2']['illumina']['test_vcf_gz'], checkIfExists: true), file(params.test_data['sarscov2']['illumina']['test_vcf_gz'], checkIfExists: true),
file(params.test_data['sarscov2']['illumina']['test_vcf_gz_tbi'], checkIfExists: true)] file(params.test_data['sarscov2']['illumina']['test_vcf_gz_tbi'], checkIfExists: true)]

11
tests/modules/bcftools/roh/test.yml
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@ -5,4 +5,13 @@
- "bcftools/roh" - "bcftools/roh"
files: files:
- path: "output/bcftools/test.roh" - path: "output/bcftools/test.roh"
- path: output/bcftools/versions.yml - path: "output/bcftools/versions.yml"
- name: "bcftools roh stub"
command: nextflow run ./tests/modules/bcftools/roh -entry test_bcftools_roh_stub -c ./tests/config/nextflow.config -c ./tests/modules/bcftools/roh/nextflow.config
tags:
- "bcftools"
- "bcftools/roh"
files:
- path: "output/bcftools/test.roh"
- path: "output/bcftools/versions.yml"