diff --git a/.github/workflows/pytest-workflow.yml b/.github/workflows/pytest-workflow.yml index 84cc8eb1..ceec03b0 100644 --- a/.github/workflows/pytest-workflow.yml +++ b/.github/workflows/pytest-workflow.yml @@ -13,7 +13,7 @@ jobs: - uses: dorny/paths-filter@v2 id: filter with: - filters: '.github/filters.yml' + filters: 'tests/config/pytest_software.yml' test: runs-on: ubuntu-20.04 @@ -80,7 +80,7 @@ jobs: # Test the module - name: Run pytest-workflow - # only use one thread for pytest-workflow to avoid race condition on conda cache. + # only use one thread for pytest-workflow to avoid race condition on conda cache. run: TMPDIR=~ PROFILE=${{ matrix.profile }} pytest --tag ${{ matrix.tags }} --symlink --kwdof - name: Upload logs on failure diff --git a/software/ivar/trim/main.nf b/software/ivar/trim/main.nf index 03dbdd9a..ec18ba55 100644 --- a/software/ivar/trim/main.nf +++ b/software/ivar/trim/main.nf @@ -6,7 +6,7 @@ options = initOptions(params.options) process IVAR_TRIM { tag "$meta.id" - label 'process_low' + label 'process_medium' publishDir "${params.outdir}", mode: params.publish_dir_mode, saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) } diff --git a/.github/filters.yml b/tests/config/pytest_software.yml similarity index 100% rename from .github/filters.yml rename to tests/config/pytest_software.yml