diff --git a/software/bwamem2/mem/main.nf b/software/bwamem2/mem/main.nf index 82bbd564..05702a3c 100644 --- a/software/bwamem2/mem/main.nf +++ b/software/bwamem2/mem/main.nf @@ -21,7 +21,6 @@ process BWAMEM2_MEM { input: tuple val(meta), path(reads) path index - path fasta output: tuple val(meta), path("*.bam"), emit: bam diff --git a/tests/software/bwamem2/mem/main.nf b/tests/software/bwamem2/mem/main.nf index e23c3c6a..0bba591b 100644 --- a/tests/software/bwamem2/mem/main.nf +++ b/tests/software/bwamem2/mem/main.nf @@ -15,8 +15,7 @@ workflow test_bwamem2_mem_single_end { BWAMEM2_MEM ( input, - file("${launchDir}/tests/data/index/E_coli/bwamem2/", checkIfExists: true), - file("${launchDir}/tests/data/fasta/E_coli/NC_010473.fa", checkIfExists: true) + file("${launchDir}/tests/data/index/E_coli/bwamem2/", checkIfExists: true) ) } @@ -32,7 +31,6 @@ workflow test_bwamem2_mem_paired_end { BWAMEM2_MEM ( input, - file("${launchDir}/tests/data/index/E_coli/bwamem2/", checkIfExists: true), - file("${launchDir}/tests/data/fasta/E_coli/NC_010473.fa", checkIfExists: true) + file("${launchDir}/tests/data/index/E_coli/bwamem2/", checkIfExists: true) ) }