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Update modules/bowtie2/align/main.nf

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Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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Matthias De Smet 2022-05-11 13:55:55 +02:00 committed by GitHub
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commit 9dd083fa94
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modules/bowtie2/align/main.nf
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@ -28,7 +28,6 @@ process BOWTIE2_ALIGN {
def unaligned = "" def unaligned = ""
def reads_args = "" def reads_args = ""
if (meta.single_end) { if (meta.single_end) {
unaligned = save_unaligned ? "--un-gz ${prefix}.unmapped.fastq.gz" : "" unaligned = save_unaligned ? "--un-gz ${prefix}.unmapped.fastq.gz" : ""
reads_args = "-U ${reads}" reads_args = "-U ${reads}"