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SusiJo 2022-05-31 14:54:39 +02:00
parent 205576279f
commit 9ef09e6add
1 changed files with 1 additions and 4 deletions
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tests/modules/gatk4/markduplicatesspark/test.yml
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@ -25,7 +25,4 @@
- path: output/gatk4/test.bam
md5sum: 898cb0a6616897d8ada90bab53bf0837
- path: output/gatk4/test.metrics
contains: "## METRICS CLASS\torg.broadinstitute.hellbender.utils.read.markduplicates.GATKDuplicationMetrics
LIBRARY\tUNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED\tSECONDARY_OR_SUPPLEMENTARY_RDS\tUNMAPPED_READS\tUNPAIRED_READ_DUPLICATES\tREAD_PAIR_DUPLICATES\tREAD_PAIR_OPTICAL_DUPLICATESPERCENT_DUPLICATION\tESTIMATED_LIBRARY_SIZE
testN\t0\t2820\t2\t2\t0\t828\t0\t0.293617\t3807
testT\t0\t2718\t0\t0\t0\t716\t0\t0.263429\t4206"
contains: "## METRICS CLASS\torg.broadinstitute.hellbender.utils.read.markduplicates.GATKDuplicationMetrics\nLIBRARY\tUNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED\tSECONDARY_OR_SUPPLEMENTARY_RDS\tUNMAPPED_READS\tUNPAIRED_READ_DUPLICATES\tREAD_PAIR_DUPLICATES\tREAD_PAIR_OPTICAL_DUPLICATESPERCENT_DUPLICATION\tESTIMATED_LIBRARY_SIZE\ntestN\t0\t2820\t2\t2\t0\t828\t0\t0.293617\t3807\ntestT\t0\t2718\t0\t0\t0\t716\t0\t0.263429\t4206"