From 9f4192d433c82fb9380f23352b29d12877d34a1f Mon Sep 17 00:00:00 2001 From: drpatelh Date: Fri, 7 Aug 2020 12:21:47 +0100 Subject: [PATCH] Add TrimGalore GitHub Actions test --- .../trim_galore.yml => trimgalore.yml} | 15 ++++++++------- 1 file changed, 8 insertions(+), 7 deletions(-) rename .github/workflows/{deprecated/trim_galore.yml => trimgalore.yml} (55%) diff --git a/.github/workflows/deprecated/trim_galore.yml b/.github/workflows/trimgalore.yml similarity index 55% rename from .github/workflows/deprecated/trim_galore.yml rename to .github/workflows/trimgalore.yml index caa7a7b6..689a0fa0 100644 --- a/.github/workflows/deprecated/trim_galore.yml +++ b/.github/workflows/trimgalore.yml @@ -1,18 +1,18 @@ -name: Trim Galore! +name: trimgalore on: push: paths: - - software/trim_galore/** - - .github/workflows/trim_galore.yml + - software/trimgalore/** + - .github/workflows/trimgalore.yml - tests pull_request: paths: - - software/trim_galore/** - - .github/workflows/trim_galore.yml + - software/trimgalore/** + - .github/workflows/trimgalore.yml - tests jobs: - run_ci_test: + ci_test: runs-on: ubuntu-latest env: NXF_ANSI_LOG: false @@ -22,8 +22,9 @@ jobs: - name: Install Nextflow run: | + export NXF_VER="20.07.1" wget -qO- get.nextflow.io | bash sudo mv nextflow /usr/local/bin/ # Test the module - - run: nextflow run ./software/trim_galore/test/ + - run: nextflow run ./software/trimgalore/test/ -profile docker