diff --git a/modules/gatk4/revertsam/main.nf b/modules/gatk4/revertsam/main.nf index a3bf3004..2f4959db 100644 --- a/modules/gatk4/revertsam/main.nf +++ b/modules/gatk4/revertsam/main.nf @@ -11,11 +11,11 @@ process GATK4_REVERTSAM { mode: params.publish_dir_mode, saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) } - conda (params.enable_conda ? 'bioconda::gatk4=4.1.9.0' : null) + conda (params.enable_conda ? "bioconda::gatk4=4.2.0.0" : null) if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { - container 'https://depot.galaxyproject.org/singularity/gatk4:4.1.9.0--py39_0' + container "https://depot.galaxyproject.org/singularity/gatk4:4.2.0.0--0" } else { - container 'quay.io/biocontainers/gatk4:4.1.9.0--py39_0' + container "quay.io/biocontainers/gatk4:4.2.0.0--0" } input: