diff --git a/.github/workflows/fastqc.yml b/.github/workflows/fastqc.yml
index fb395797..beeaea5a 100644
--- a/.github/workflows/fastqc.yml
+++ b/.github/workflows/fastqc.yml
@@ -6,7 +6,7 @@ on:
     paths: tools/fastqc/*
 
 jobs:
-  run_multiqc:
+  run_ci_test:
     runs-on: ubuntu-latest
 
     steps:
@@ -14,6 +14,10 @@ jobs:
     # Check out the repository
     - uses: actions/checkout@v1
 
+    - name: Install Nextflow
+      run: |
+        wget -qO- get.nextflow.io | bash
+        sudo mv nextflow /usr/local/bin/
+
     # Test the module
-    - uses: docker://quay.io/biocontainers/nextflow:19.10.0--hecc5488_0
-      run: nextflow run ./tools/fastqc/test/
+    - run: nextflow run ./tools/fastqc/test/
diff --git a/.github/workflows/samtools_index.yml b/.github/workflows/samtools_index.yml
index 32719e5e..fcc26ecf 100644
--- a/.github/workflows/samtools_index.yml
+++ b/.github/workflows/samtools_index.yml
@@ -6,7 +6,7 @@ on:
     paths: tools/samtools/index*
 
 jobs:
-  run_multiqc:
+  run_ci_test:
     runs-on: ubuntu-latest
 
     steps:
@@ -14,6 +14,10 @@ jobs:
     # Check out the repository
     - uses: actions/checkout@v1
 
+    - name: Install Nextflow
+      run: |
+        wget -qO- get.nextflow.io | bash
+        sudo mv nextflow /usr/local/bin/
+
     # Test the module
-    - uses: docker://quay.io/biocontainers/nextflow:19.10.0--hecc5488_0
-      run: nextflow run ./tools/samtools/index/test/
+    - run: nextflow run ./tools/samtools/index/test/
diff --git a/.github/workflows/samtools_sort.yml b/.github/workflows/samtools_sort.yml
index 46791408..c9fa338a 100644
--- a/.github/workflows/samtools_sort.yml
+++ b/.github/workflows/samtools_sort.yml
@@ -6,7 +6,7 @@ on:
     paths: tools/samtools/sort*
 
 jobs:
-  run_multiqc:
+  run_ci_test:
     runs-on: ubuntu-latest
 
     steps:
@@ -14,6 +14,10 @@ jobs:
     # Check out the repository
     - uses: actions/checkout@v1
 
+    - name: Install Nextflow
+      run: |
+        wget -qO- get.nextflow.io | bash
+        sudo mv nextflow /usr/local/bin/
+
     # Test the module
-    - uses: docker://quay.io/biocontainers/nextflow:19.10.0--hecc5488_0
-      run: nextflow run ./tools/samtools/sort/test/
+    - run: nextflow run ./tools/samtools/sort/test/
diff --git a/.github/workflows/trim_galore.yml b/.github/workflows/trim_galore.yml
index 48c93b5f..437cc12c 100644
--- a/.github/workflows/trim_galore.yml
+++ b/.github/workflows/trim_galore.yml
@@ -6,7 +6,7 @@ on:
     paths: tools/trim_galore/*
 
 jobs:
-  run_multiqc:
+  run_ci_test:
     runs-on: ubuntu-latest
 
     steps:
@@ -14,6 +14,10 @@ jobs:
     # Check out the repository
     - uses: actions/checkout@v1
 
+    - name: Install Nextflow
+      run: |
+        wget -qO- get.nextflow.io | bash
+        sudo mv nextflow /usr/local/bin/
+
     # Test the module
-    - uses: docker://quay.io/biocontainers/nextflow:19.10.0--hecc5488_0
-      run: nextflow run ./tools/trim_galore/test/
+    - run: nextflow run ./tools/trim_galore/test/