diff --git a/modules/manta/tumoronly/main.nf b/modules/manta/tumoronly/main.nf index 3d52b16e..9068fd88 100644 --- a/modules/manta/tumoronly/main.nf +++ b/modules/manta/tumoronly/main.nf @@ -11,8 +11,7 @@ process MANTA_TUMORONLY { tuple val(meta), path(input), path(input_index) path fasta path fai - path target_bed - path target_bed_tbi + tuple path(target_bed), path(target_bed_tbi) output: tuple val(meta), path("*candidate_small_indels.vcf.gz") , emit: candidate_small_indels_vcf