From a071b2d44df4cb28c620057df0bdd070ce84aaff Mon Sep 17 00:00:00 2001
From: nickhsmith <smithnickh@gmail.com>
Date: Thu, 24 Feb 2022 11:51:41 +0100
Subject: [PATCH] Update main.nf

---
 modules/manta/tumoronly/main.nf | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/modules/manta/tumoronly/main.nf b/modules/manta/tumoronly/main.nf
index 3d52b16e..9068fd88 100644
--- a/modules/manta/tumoronly/main.nf
+++ b/modules/manta/tumoronly/main.nf
@@ -11,8 +11,7 @@ process MANTA_TUMORONLY {
     tuple val(meta), path(input), path(input_index)
     path fasta
     path fai
-    path target_bed
-    path target_bed_tbi
+    tuple path(target_bed), path(target_bed_tbi)
 
     output:
     tuple val(meta), path("*candidate_small_indels.vcf.gz")    , emit: candidate_small_indels_vcf