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Corrected md5sum and output

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sruthipsuresh 2021-01-08 13:22:07 -06:00
parent 2f19b4279c
commit a108bd407e
2 changed files with 3 additions and 7 deletions
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6
tests/software/bedtools/main.nf
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@ -8,7 +8,7 @@ include { BEDTOOLS_INTERSECT } from '../../../software/bedtools/intersect/main.n
include { BEDTOOLS_MERGE } from '../../../software/bedtools/merge/main.nf' addParams( options: [:] )
include { BEDTOOLS_SLOP as BEDTOOLS_SLOP_S} from '../../../software/bedtools/slop/main.nf' addParams( options: [:] )
include { BEDTOOLS_SLOP as BEDTOOLS_SLOP_AS} from '../../../software/bedtools/slop/main.nf' addParams( options: [:] )
include { BEDTOOLS_SORT } from '../../../software/bedtools/sort/main.nf' addParams( options: [publish_dir: 'test_bedtools_sort'] ) // needed for merge
include { BEDTOOLS_SORT } from '../../../software/bedtools/sort/main.nf' addParams( options: [:] )
workflow test_bedtools_complement {
@ -77,10 +77,6 @@ workflow test_bedtools_sort {
file("${launchDir}/tests/data/bed/A.bed", checkIfExists: true) ]
BEDTOOLS_SORT( input )
emit:
sort = BEDTOOLS_SORT.out.sort
}

4
tests/software/bedtools/test.yml
View file

@ -14,7 +14,7 @@
- bedtools_genomecov
files:
- path: output/bedtools/test.bed
md5sum: 5be12e847b933b02bf42437e8562d06c
md5sum: 8c8238ca3cdac7a0e650ade95ee941f4
- name: Run bedtools intersect test workflow
command: nextflow run ./tests/software/bedtools/ -profile docker -entry test_bedtools_intersect -c tests/config/nextflow.config
@ -35,7 +35,7 @@
- path: output/bedtools/test.sort.bed
md5sum: 4279202e33fcce3d19f420f1b27fddee
# linked to sort module
# TODO link to sort module
- name: Run bedtools merge test workflow
command: nextflow run ./tests/software/bedtools/ -profile docker -entry test_bedtools_merge -c tests/config/nextflow.config
tags: