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Update RSeQC version

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drpatelh 2020-10-12 16:04:04 +01:00
parent 436a1f983c
commit a1b705d412
7 changed files with 21 additions and 21 deletions
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6
software/rseqc/bamstat/main.nf
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@ -8,10 +8,10 @@ process RSEQC_BAMSTAT {
mode: params.publish_dir_mode, mode: params.publish_dir_mode,
saveAs: { filename -> saveFiles(filename:filename, options:options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) } saveAs: { filename -> saveFiles(filename:filename, options:options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) }
container "quay.io/biocontainers/rseqc:3.0.1--py37h516909a_1" container "quay.io/biocontainers/rseqc:4.0.0--py38h0213d0e_0"
//container "https://depot.galaxyproject.org/singularity/rseqc:3.0.1--py37h516909a_1" //container "https://depot.galaxyproject.org/singularity/rseqc:4.0.0--py38h0213d0e_0"
conda (params.conda ? "bioconda::rseqc=3.0.1" : null) conda (params.conda ? "bioconda::rseqc=4.0.0" : null)
input: input:
tuple val(meta), path(bam) tuple val(meta), path(bam)

6
software/rseqc/inferexperiment/main.nf
View file

@ -8,10 +8,10 @@ process RSEQC_INFEREXPERIMENT {
mode: params.publish_dir_mode, mode: params.publish_dir_mode,
saveAs: { filename -> saveFiles(filename:filename, options:options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) } saveAs: { filename -> saveFiles(filename:filename, options:options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) }
container "quay.io/biocontainers/rseqc:3.0.1--py37h516909a_1" container "quay.io/biocontainers/rseqc:4.0.0--py38h0213d0e_0"
//container "https://depot.galaxyproject.org/singularity/rseqc:3.0.1--py37h516909a_1" //container "https://depot.galaxyproject.org/singularity/rseqc:4.0.0--py38h0213d0e_0"
conda (params.conda ? "bioconda::rseqc=3.0.1" : null) conda (params.conda ? "bioconda::rseqc=4.0.0" : null)
input: input:
tuple val(meta), path(bam) tuple val(meta), path(bam)

6
software/rseqc/innerdistance/main.nf
View file

@ -8,10 +8,10 @@ process RSEQC_INNERDISTANCE {
mode: params.publish_dir_mode, mode: params.publish_dir_mode,
saveAs: { filename -> saveFiles(filename:filename, options:options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) } saveAs: { filename -> saveFiles(filename:filename, options:options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) }
container "quay.io/biocontainers/rseqc:3.0.1--py37h516909a_1" container "quay.io/biocontainers/rseqc:4.0.0--py38h0213d0e_0"
//container "https://depot.galaxyproject.org/singularity/rseqc:3.0.1--py37h516909a_1" //container "https://depot.galaxyproject.org/singularity/rseqc:4.0.0--py38h0213d0e_0"
conda (params.conda ? "bioconda::rseqc=3.0.1" : null) conda (params.conda ? "bioconda::rseqc=4.0.0" : null)
input: input:
tuple val(meta), path(bam) tuple val(meta), path(bam)

6
software/rseqc/junctionannotation/main.nf
View file

@ -8,10 +8,10 @@ process RSEQC_JUNCTIONANNOTATION {
mode: params.publish_dir_mode, mode: params.publish_dir_mode,
saveAs: { filename -> saveFiles(filename:filename, options:options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) } saveAs: { filename -> saveFiles(filename:filename, options:options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) }
container "quay.io/biocontainers/rseqc:3.0.1--py37h516909a_1" container "quay.io/biocontainers/rseqc:4.0.0--py38h0213d0e_0"
//container "https://depot.galaxyproject.org/singularity/rseqc:3.0.1--py37h516909a_1" //container "https://depot.galaxyproject.org/singularity/rseqc:4.0.0--py38h0213d0e_0"
conda (params.conda ? "bioconda::rseqc=3.0.1" : null) conda (params.conda ? "bioconda::rseqc=4.0.0" : null)
input: input:
tuple val(meta), path(bam) tuple val(meta), path(bam)

6
software/rseqc/junctionsaturation/main.nf
View file

@ -8,10 +8,10 @@ process RSEQC_JUNCTIONSATURATION {
mode: params.publish_dir_mode, mode: params.publish_dir_mode,
saveAs: { filename -> saveFiles(filename:filename, options:options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) } saveAs: { filename -> saveFiles(filename:filename, options:options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) }
container "quay.io/biocontainers/rseqc:3.0.1--py37h516909a_1" container "quay.io/biocontainers/rseqc:4.0.0--py38h0213d0e_0"
//container "https://depot.galaxyproject.org/singularity/rseqc:3.0.1--py37h516909a_1" //container "https://depot.galaxyproject.org/singularity/rseqc:4.0.0--py38h0213d0e_0"
conda (params.conda ? "bioconda::rseqc=3.0.1" : null) conda (params.conda ? "bioconda::rseqc=4.0.0" : null)
input: input:
tuple val(meta), path(bam) tuple val(meta), path(bam)

6
software/rseqc/readdistribution/main.nf
View file

@ -8,10 +8,10 @@ process RSEQC_READDISTRIBUTION {
mode: params.publish_dir_mode, mode: params.publish_dir_mode,
saveAs: { filename -> saveFiles(filename:filename, options:options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) } saveAs: { filename -> saveFiles(filename:filename, options:options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) }
container "quay.io/biocontainers/rseqc:3.0.1--py37h516909a_1" container "quay.io/biocontainers/rseqc:4.0.0--py38h0213d0e_0"
//container "https://depot.galaxyproject.org/singularity/rseqc:3.0.1--py37h516909a_1" //container "https://depot.galaxyproject.org/singularity/rseqc:4.0.0--py38h0213d0e_0"
conda (params.conda ? "bioconda::rseqc=3.0.1" : null) conda (params.conda ? "bioconda::rseqc=4.0.0" : null)
input: input:
tuple val(meta), path(bam) tuple val(meta), path(bam)

6
software/rseqc/readduplication/main.nf
View file

@ -8,10 +8,10 @@ process RSEQC_READDUPLICATION {
mode: params.publish_dir_mode, mode: params.publish_dir_mode,
saveAs: { filename -> saveFiles(filename:filename, options:options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) } saveAs: { filename -> saveFiles(filename:filename, options:options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) }
container "quay.io/biocontainers/rseqc:3.0.1--py37h516909a_1" container "quay.io/biocontainers/rseqc:4.0.0--py38h0213d0e_0"
//container "https://depot.galaxyproject.org/singularity/rseqc:3.0.1--py37h516909a_1" //container "https://depot.galaxyproject.org/singularity/rseqc:4.0.0--py38h0213d0e_0"
conda (params.conda ? "bioconda::rseqc=3.0.1" : null) conda (params.conda ? "bioconda::rseqc=4.0.0" : null)
input: input:
tuple val(meta), path(bam) tuple val(meta), path(bam)