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Update modules/mosdepth/main.nf

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Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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Matthias De Smet 2022-05-24 13:45:52 +02:00 committed by GitHub
parent 5bc2d419a9
commit a2a8e09762
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modules/mosdepth/main.nf
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@ -32,7 +32,7 @@ process MOSDEPTH {
def reference = fasta ? "--fasta ${fasta}" : ""
def interval = bed ? "--by ${bed}" : ""
if (bed && args.contains("--by")) {
exit 1, "--by can only be specified once."
exit 1, "'--by' can only be specified once when running mosdepth! Either remove input BED file definition or remove '--by' from 'ext.args' definition"
}
"""