millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-11-14 05:43:08 +00:00
Code Issues Releases Packages Activity

fixed test md5s

Browse source
This commit is contained in:
kevinmenden 2021-02-01 13:36:25 +01:00
parent b5298f94d8
commit a342296d70
1 changed files with 97 additions and 91 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

188
tests/software/quast/test.yml
View file

@ -4,82 +4,88 @@
- quast - quast
- quast_reference - quast_reference
files: files:
- path: ./output/quast/quast/contigs_reports/transposed_report_misassemblies.tsv - path: ./output/quast/quast/basic_stats/NGx_plot.pdf
md5sum: 4d24cc0da823a100a076aef36f9fd75e
- path: ./output/quast/quast/contigs_reports/GCA_011545545_1_ASM1154554v1_cds_from_genomic.mis_contigs.fa
- path: ./output/quast/quast/contigs_reports/contigs_report_GCA_011545545-1_ASM1154554v1_cds_from_genomic.stdout
- path: ./output/quast/quast/aligned_stats/NGAx_plot.pdf
- path: ./output/quast/quast/report.pdf
- path: ./output/quast/quast/contigs_reports/misassemblies_report.tex
md5sum: ffe19cf4d5332952f0627e9cd82e3375
- path: ./output/quast/quast/aligned_stats/NAx_plot.pdf
- path: ./output/quast/quast/icarus.html
- path: ./output/quast/quast/report.tsv
md5sum: 503ebb57ffed0422fd7aff4025e21143
- path: ./output/quast/quast/contigs_reports/transposed_report_misassemblies.tex
md5sum: 85614257e0bb62ac750f7872886b2fbf
- path: ./output/quast/quast/basic_stats/gc.icarus.txt
md5sum: b3a770802ff9b2dd4ee8e47bddb2df3e
- path: ./output/quast/quast/aligned_stats/cumulative_plot.pdf
- path: ./output/quast/quast/contigs_reports/minimap_output/GCA_011545545-1_ASM1154554v1_cds_from_genomic.coords.filtered - path: ./output/quast/quast/contigs_reports/minimap_output/GCA_011545545-1_ASM1154554v1_cds_from_genomic.coords.filtered
md5sum: ec9191d0acb5d5bce56b4842551a8598 md5sum: ec9191d0acb5d5bce56b4842551a8598
- path: ./output/quast/quast/basic_stats/Nx_plot.pdf - path: ./output/quast/quast/aligned_stats/NGAx_plot.pdf
- path: ./output/quast/quast/contigs_reports/minimap_output/GCA_011545545-1_ASM1154554v1_cds_from_genomic.coords
md5sum: dda3fc0addc41ecc0d5183dee6f95886
- path: ./output/quast/quast/contigs_reports/minimap_output/GCA_011545545-1_ASM1154554v1_cds_from_genomic.coords_tmp
md5sum: ce66eaeb99fdc11e4d50efadc1816e04
- path: ./output/quast/quast/contigs_reports/unaligned_report.tsv
md5sum: 769f2d9d7deb5e7a63e238d8ba0cfe13
- path: ./output/quast/quast/basic_stats/GC_content_plot.pdf
- path: ./output/quast/quast/contigs_reports/contigs_report_GCA_011545545-1_ASM1154554v1_cds_from_genomic.mis_contigs.info
md5sum: d41d8cd98f00b204e9800998ecf8427e
- path: ./output/quast/quast/contigs_reports/contigs_report_GCA_011545545-1_ASM1154554v1_cds_from_genomic.unaligned.info
md5sum: a8505cf206bf53ca369f7e3073fee587
- path: ./output/quast/quast/contigs_reports/minimap_output/GCA_011545545-1_ASM1154554v1_cds_from_genomic.sf
- path: ./output/quast/quast/transposed_report.txt
md5sum: 389e9fa2b29b967cb658c0770c941ce6
- path: ./output/quast/quast/genome_stats/GCA_011545545-1_ASM1154554v1_cds_from_genomic_gaps.txt
md5sum: c52381f09ea40b6141be5232494727b6
- path: ./output/quast/quast/quast.log
- path: ./output/quast/report.tsv
md5sum: 503ebb57ffed0422fd7aff4025e21143
- path: ./output/quast/quast/contigs_reports/transposed_report_misassemblies.txt
md5sum: 53c481fe8b3ef18280ea86cbded78b31
- path: ./output/quast/quast/contigs_reports/unaligned_report.txt
md5sum: c1c26797084ea743ec5a224ab97adb1f
- path: ./output/quast/quast/report.txt
md5sum: 41bf3c24e68afce5ef0ba91004e57f7d
- path: ./output/quast/quast/transposed_report.tex
md5sum: 2a69aada90cc1e788a4bc877c44d79c8
- path: ./output/quast/quast/basic_stats/GCA_011545545.1_ASM1154554v1_cds_from_genomic_GC_content_plot.pdf
- path: ./output/quast/quast/contigs_reports/misassemblies_report.tsv
md5sum: 33144f8d064782864e8400e3a08b2a3a
- path: ./output/quast/quast/contigs_reports/unaligned_report.tex
md5sum: 48562e30903fcf33946e13b602b0e324
- path: ./output/quast/quast/contigs_reports/misassemblies_plot.pdf
- path: ./output/quast/quast/transposed_report.tsv
md5sum: baab35c91e87432432113db1e4085f7b
- path: ./output/quast/quast/report.tex
md5sum: 8e72428ff7e7175bf47d58c10d8332e8
- path: ./output/quast/quast/contigs_reports/misassemblies_frcurve_plot.pdf
- path: ./output/quast/quast/contigs_reports/minimap_output/GCA_011545545-1_ASM1154554v1_cds_from_genomic.used_snps.gz
md5sum: 7b1db1b433cd95243a949bcb72e7e3a6
- path: ./output/quast/quast/contigs_reports/misassemblies_report.txt
md5sum: 0784e0d31e9f2a165730cc0029023427
- path: ./output/quast/quast/icarus_viewers/alignment_viewer.html
md5sum: bd63165a204a2ab424f8e81c647038d1
- path: ./output/quast/quast/contigs_reports/all_alignments_GCA_011545545-1_ASM1154554v1_cds_from_genomic.tsv
md5sum: c247152eb82b361106492642fd796e2c
- path: ./output/quast/quast/genome_stats/genome_info.txt
md5sum: 7c622ab66040d413a229419bf6b5181f
- path: ./output/quast/quast/basic_stats/NGx_plot.pdf
- path: ./output/quast/quast/contigs_reports/minimap_output/GCA_011545545-1_ASM1154554v1_cds_from_genomic.unaligned
md5sum: d41d8cd98f00b204e9800998ecf8427e
- path: ./output/quast/quast/contigs_reports/contigs_report_GCA_011545545-1_ASM1154554v1_cds_from_genomic.stderr
- path: ./output/quast/quast/icarus_viewers/contig_size_viewer.html - path: ./output/quast/quast/icarus_viewers/contig_size_viewer.html
md5sum: c42838b1553759fb0460a9854e39da36 md5sum: c42838b1553759fb0460a9854e39da36
- path: ./output/quast/report.tsv
md5sum: b203a9d2c995bd66552eeb5cb0a98762
- path: ./output/quast/quast/report.tex
md5sum: 8168f197dfb2f781accdefaa0d90fc87
- path: ./output/quast/quast/contigs_reports/misassemblies_frcurve_plot.pdf
- path: ./output/quast/quast/transposed_report.tex
md5sum: 0b8fd00649a5758024c8093d5919f71c
- path: ./output/quast/quast/contigs_reports/minimap_output/GCA_011545545-1_ASM1154554v1_cds_from_genomic.coords
md5sum: dda3fc0addc41ecc0d5183dee6f95886
- path: ./output/quast/quast/transposed_report.txt
md5sum: 73216314e65ef91c24422d5bdd0795e4
- path: ./output/quast/quast/report.html - path: ./output/quast/quast/report.html
- path: ./output/quast/quast/report.pdf
- path: ./output/quast/quast/contigs_reports/all_alignments_GCA_011545545-1_ASM1154554v1_cds_from_genomic.tsv
md5sum: c247152eb82b361106492642fd796e2c
- path: ./output/quast/quast/contigs_reports/minimap_output/GCA_011545545-1_ASM1154554v1_cds_from_genomic.used_snps.gz
md5sum: 7b1db1b433cd95243a949bcb72e7e3a6
- path: ./output/quast/quast/contigs_reports/unaligned_report.tex
md5sum: 48562e30903fcf33946e13b602b0e324
- path: ./output/quast/quast/contigs_reports/minimap_output/GCA_011545545-1_ASM1154554v1_cds_from_genomic.sf
- path: ./output/quast/quast/contigs_reports/transposed_report_misassemblies.txt
md5sum: 53c481fe8b3ef18280ea86cbded78b31
- path: ./output/quast/quast/contigs_reports/contigs_report_GCA_011545545-1_ASM1154554v1_cds_from_genomic.mis_contigs.info
md5sum: d41d8cd98f00b204e9800998ecf8427e
- path: ./output/quast/quast/contigs_reports/unaligned_report.tsv
md5sum: 769f2d9d7deb5e7a63e238d8ba0cfe13
- path: ./output/quast/quast/basic_stats/GCA_011545545.1_ASM1154554v1_cds_from_genomic_GC_content_plot.pdf
- path: ./output/quast/quast/genome_stats/features_cumulative_plot.pdf
- path: ./output/quast/quast/basic_stats/GC_content_plot.pdf
- path: ./output/quast/quast/contigs_reports/transposed_report_misassemblies.tex
md5sum: 85614257e0bb62ac750f7872886b2fbf
- path: ./output/quast/quast/quast.log
- path: ./output/quast/quast/contigs_reports/misassemblies_report.tsv
md5sum: 33144f8d064782864e8400e3a08b2a3a
- path: ./output/quast/quast/contigs_reports/contigs_report_GCA_011545545-1_ASM1154554v1_cds_from_genomic.unaligned.info
md5sum: a8505cf206bf53ca369f7e3073fee587
- path: ./output/quast/quast/genome_stats/GCA_011545545-1_ASM1154554v1_cds_from_genomic_genomic_features_any.txt
md5sum: 307b3bb1f42fc2f11a60a2e9846021d7
- path: ./output/quast/quast/icarus.html
md5sum: 6e57f5f7d07528496fc2f35b449951fe
- path: ./output/quast/quast/contigs_reports/transposed_report_misassemblies.tsv
md5sum: 4d24cc0da823a100a076aef36f9fd75e
- path: ./output/quast/quast/contigs_reports/contigs_report_GCA_011545545-1_ASM1154554v1_cds_from_genomic.stderr
- path: ./output/quast/quast/aligned_stats/cumulative_plot.pdf
- path: ./output/quast/quast/genome_stats/genome_info.txt
md5sum: bc3df27ad7356c045c9a108f9d4bcfbe
- path: ./output/quast/quast/genome_stats/features_frcurve_plot.pdf
- path: ./output/quast/quast/contigs_reports/misassemblies_report.txt
md5sum: 0784e0d31e9f2a165730cc0029023427
- path: ./output/quast/quast/contigs_reports/minimap_output/GCA_011545545-1_ASM1154554v1_cds_from_genomic.unaligned
md5sum: d41d8cd98f00b204e9800998ecf8427e
- path: ./output/quast/quast/contigs_reports/contigs_report_GCA_011545545-1_ASM1154554v1_cds_from_genomic.stdout
- path: ./output/quast/quast/contigs_reports/unaligned_report.txt
md5sum: c1c26797084ea743ec5a224ab97adb1f
- path: ./output/quast/quast/genome_stats/GCA_011545545-1_ASM1154554v1_cds_from_genomic_gaps.txt
md5sum: c52381f09ea40b6141be5232494727b6
- path: ./output/quast/quast/icarus_viewers/alignment_viewer.html
md5sum: ad5176f21d3c4809a9a8f9c27bb8d70a
- path: ./output/quast/quast/contigs_reports/misassemblies_report.tex
md5sum: ffe19cf4d5332952f0627e9cd82e3375
- path: ./output/quast/quast/contigs_reports/minimap_output/GCA_011545545-1_ASM1154554v1_cds_from_genomic.coords_tmp
md5sum: ce66eaeb99fdc11e4d50efadc1816e04
- path: ./output/quast/quast/basic_stats/gc.icarus.txt
md5sum: b3a770802ff9b2dd4ee8e47bddb2df3e
- path: ./output/quast/quast/basic_stats/Nx_plot.pdf
- path: ./output/quast/quast/transposed_report.tsv
md5sum: 1754bd6c6fa8a0172a342a48dd3ca505
- path: ./output/quast/quast/basic_stats/cumulative_plot.pdf - path: ./output/quast/quast/basic_stats/cumulative_plot.pdf
- path: ./output/quast/quast/report.txt
md5sum: e334b3390a5028cbf88fe4ccab2b6499
- path: ./output/quast/quast/contigs_reports/misassemblies_plot.pdf
- path: ./output/quast/quast/report.tsv
md5sum: b203a9d2c995bd66552eeb5cb0a98762
- path: ./output/quast/quast/contigs_reports/GCA_011545545_1_ASM1154554v1_cds_from_genomic.mis_contigs.fa
md5sum: d41d8cd98f00b204e9800998ecf8427e
- path: ./output/quast/quast/aligned_stats/NAx_plot.pdf
- name: quast_noref - name: quast_noref
command: nextflow run ./tests/software/quast -profile docker -entry test_quast_noref -c ./tests/config/nextflow.config command: nextflow run ./tests/software/quast -profile docker -entry test_quast_noref -c ./tests/config/nextflow.config
@ -87,28 +93,28 @@
- quast - quast
- quast_no_reference - quast_no_reference
files: files:
- path: ./output/quast/quast/report.pdf
- path: ./output/quast/quast/basic_stats/GC_content_plot.pdf
- path: ./output/quast/quast/transposed_report.tsv
md5sum: 1a82adfc057b6dc788034a6ce023cb56
- path: ./output/quast/quast/basic_stats/Nx_plot.pdf
- path: ./output/quast/quast/quast.log
- path: ./output/quast/quast/basic_stats/cumulative_plot.pdf
- path: ./output/quast/quast/transposed_report.tex
md5sum: a86aa094f9ab4bc1df35c5a7add2d0b0
- path: ./output/quast/quast/basic_stats/GCA_011545545.1_ASM1154554v1_genomic_GC_content_plot.pdf
- path: ./output/quast/quast/report.txt
md5sum: 7a2e442c18dd2730cfd38723f1c9c8f9
- path: ./output/quast/quast/icarus_viewers/contig_size_viewer.html - path: ./output/quast/quast/icarus_viewers/contig_size_viewer.html
md5sum: dcf600c49ee86783475cb25215072630 md5sum: d2680b8083139e62baf7af0f852d52b8
- path: ./output/quast/quast/report.tsv
md5sum: 75882c0a5d811246395f5ea56146ce76
- path: ./output/quast/quast/report.tex
md5sum: 132edd2e916fc2a76a7b13973a0ffa4b
- path: ./output/quast/quast/icarus.html
md5sum: 9d7429362288c5078e6d6e7efcfc1ff7
- path: ./output/quast/quast/transposed_report.txt - path: ./output/quast/quast/transposed_report.txt
md5sum: 154d88ec197c7b1bda5938232a79a00a md5sum: b6b126e9dcfd8c8e7bd36dff9220caf0
- path: ./output/quast/report.tsv - path: ./output/quast/report.tsv
md5sum: 75882c0a5d811246395f5ea56146ce76 md5sum: 55d2938fcdb678e97d441cf32b9c740e
- path: ./output/quast/quast/icarus.html
md5sum: dcb11b4c7b6c21190c1344c46288d3f4
- path: ./output/quast/quast/report.txt
md5sum: c8e87f40e888a0395be04f78532d9deb
- path: ./output/quast/quast/transposed_report.tsv
md5sum: 27b6c755be5d70e3eed22e1bf3f68ce5
- path: ./output/quast/quast/quast.log
- path: ./output/quast/quast/report.tex
md5sum: 69c31172ae6257663b22bb192ba84682
- path: ./output/quast/quast/report.pdf
- path: ./output/quast/quast/basic_stats/GCA_011545545.1_ASM1154554v1_cds_from_genomic_GC_content_plot.pdf
- path: ./output/quast/quast/basic_stats/cumulative_plot.pdf
- path: ./output/quast/quast/report.tsv
md5sum: 55d2938fcdb678e97d441cf32b9c740e
- path: ./output/quast/quast/transposed_report.tex
md5sum: 213fb615afe21904e52d670e602c1f62
- path: ./output/quast/quast/basic_stats/GC_content_plot.pdf
- path: ./output/quast/quast/basic_stats/Nx_plot.pdf
- path: ./output/quast/quast/report.html - path: ./output/quast/quast/report.html