diff --git a/modules/umitools/dedup/main.nf b/modules/umitools/dedup/main.nf index 07e6061d..56cb3a4b 100644 --- a/modules/umitools/dedup/main.nf +++ b/modules/umitools/dedup/main.nf @@ -26,6 +26,8 @@ process UMITOOLS_DEDUP { def prefix = task.ext.prefix ?: "${meta.id}" def paired = meta.single_end ? "" : "--paired" def stats = get_output_stats ? "--output-stats $prefix" : "" + + if (!(args ==~ /.*--random-seed.*/)) {args += " --random-seed=100"} """ umi_tools \\ dedup \\