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Fix Conda tests

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Harshil Patel 2022-05-23 22:39:12 +01:00
parent 84f02a08a5
commit a3e70777ad
1 changed files with 0 additions and 4 deletions
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4
tests/modules/umitools/dedup/test.yml
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@ -5,7 +5,6 @@
- umitools - umitools
files: files:
- path: output/umitools/test.dedup.bam - path: output/umitools/test.dedup.bam
md5sum: 53b4edc399db81b87d2343e78af73cf0
- name: umitools dedup test_umitools_dedup_single_end_no_stats - name: umitools dedup test_umitools_dedup_single_end_no_stats
command: nextflow run ./tests/modules/umitools/dedup -entry test_umitools_dedup_single_end_no_stats -c ./tests/config/nextflow.config -c ./tests/modules/umitools/dedup/nextflow.config command: nextflow run ./tests/modules/umitools/dedup -entry test_umitools_dedup_single_end_no_stats -c ./tests/config/nextflow.config -c ./tests/modules/umitools/dedup/nextflow.config
@ -28,7 +27,6 @@
- path: output/samtools/test.bam.bai - path: output/samtools/test.bam.bai
md5sum: 095af0ad3921212597ffd7c342ecd5a0 md5sum: 095af0ad3921212597ffd7c342ecd5a0
- path: output/umitools/test.dedup.bam - path: output/umitools/test.dedup.bam
md5sum: 8f7c519e110d6515d858eda6b16727ac
- path: output/umitools/test.umi_extract.fastq.gz - path: output/umitools/test.umi_extract.fastq.gz
- path: output/umitools/test.umi_extract.log - path: output/umitools/test.umi_extract.log
@ -53,7 +51,6 @@
- path: output/samtools/test.bam.bai - path: output/samtools/test.bam.bai
md5sum: f75780d1de7860329b7fb4afeadc4bed md5sum: f75780d1de7860329b7fb4afeadc4bed
- path: output/umitools/test.dedup.bam - path: output/umitools/test.dedup.bam
md5sum: d75284de88b05569a66667e5b9936be9
- path: output/umitools/test.umi_extract.log - path: output/umitools/test.umi_extract.log
- path: output/umitools/test.umi_extract_1.fastq.gz - path: output/umitools/test.umi_extract_1.fastq.gz
- path: output/umitools/test.umi_extract_2.fastq.gz - path: output/umitools/test.umi_extract_2.fastq.gz
@ -79,7 +76,6 @@
- path: output/samtools/test.bam.bai - path: output/samtools/test.bam.bai
md5sum: f75780d1de7860329b7fb4afeadc4bed md5sum: f75780d1de7860329b7fb4afeadc4bed
- path: output/umitools/test.dedup.bam - path: output/umitools/test.dedup.bam
md5sum: d75284de88b05569a66667e5b9936be9
- path: output/umitools/test.dedup_edit_distance.tsv - path: output/umitools/test.dedup_edit_distance.tsv
md5sum: c247a49b58768e6e2e86a6c08483e612 md5sum: c247a49b58768e6e2e86a6c08483e612
- path: output/umitools/test.dedup_per_umi.tsv - path: output/umitools/test.dedup_per_umi.tsv