From a57169a5dab1f84285962e1e04a9fb2108651d67 Mon Sep 17 00:00:00 2001
From: Chris Cheshire <chris.j.cheshire@gmail.com>
Date: Thu, 17 Dec 2020 14:23:20 +0000
Subject: [PATCH] seacr | updated test script

---
 tests/software/seacr/test.yml | 48 +++++------------------------------
 1 file changed, 6 insertions(+), 42 deletions(-)

diff --git a/tests/software/seacr/test.yml b/tests/software/seacr/test.yml
index e9ec7ad7..88568d35 100644
--- a/tests/software/seacr/test.yml
+++ b/tests/software/seacr/test.yml
@@ -1,44 +1,8 @@
-- name: Run samtools call peak test workflow
-  command: nextflow run ./tests/software/samtools/ -profile docker -entry test_samtools_flagstat -c tests/config/nextflow.config
+- name: Run seacr call peak test workflow
+  command: nextflow run ./tests/software/seacr/ -profile docker -entry test_seacr_callpeak -c tests/config/nextflow.config
   tags:
-    - samtools
-    - samtools_flagstat
+    - seacr
+    - seacr_callpeak
   files:
-    - path: output/samtools/test.paired_end.sorted.bam.flagstat
-      md5sum: 80590621c74f5ee43ada20d010a3837f
-
-- name: Run samtools idxstats test workflow
-  command: nextflow run ./tests/software/samtools/ -profile docker -entry test_samtools_idxstats -c tests/config/nextflow.config
-  tags:
-    - samtools
-    - samtools_idxstats
-  files:
-    - path: output/samtools/test.paired_end.sorted.bam.idxstats
-      md5sum: 3bee8b7d55e412da2b3816c5a18d60d5
-
-- name: Run samtools index test workflow
-  command: nextflow run ./tests/software/samtools/ -profile docker -entry test_samtools_index -c tests/config/nextflow.config
-  tags:
-    - samtools
-    - samtools_index
-  files:
-    - path: output/samtools/test.paired_end.sorted.bam.bai
-      md5sum: 67338c2995eae82c849830ca55aa7bd1
-
-- name: Run samtools sort test workflow
-  command: nextflow run ./tests/software/samtools/ -profile docker -entry test_samtools_sort -c tests/config/nextflow.config
-  tags:
-    - samtools
-    - samtools_sort
-  files:
-    - path: output/samtools/test.bam
-      md5sum: a41bfadacd2eeef1d31e05c135cc4f4e
-
-- name: Run samtools stats test workflow
-  command: nextflow run ./tests/software/samtools/ -profile docker -entry test_samtools_stats -c tests/config/nextflow.config
-  tags:
-    - samtools
-    - samtools_stats
-  files:
-    - path: output/samtools/test.paired_end.sorted.bam.stats
-      md5sum: 06c183864d6e47ab89b0650cae831a93
+    - path: output/seacr/test_1.stringent.bed
+      md5sum: 3ac70475669eb6a7b8ca89e19a08a28e
\ No newline at end of file