From a5e7943f2be542cd186abbed45fb522546605dd8 Mon Sep 17 00:00:00 2001
From: Simone Carpanzano <96130486+carpanz@users.noreply.github.com>
Date: Wed, 27 Apr 2022 22:43:31 +0200
Subject: [PATCH] update krona module

add "$args" to the module
---
 modules/krona/kronadb/main.nf | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/modules/krona/kronadb/main.nf b/modules/krona/kronadb/main.nf
index afcb0694..3ba745a2 100644
--- a/modules/krona/kronadb/main.nf
+++ b/modules/krona/kronadb/main.nf
@@ -18,7 +18,9 @@ process KRONA_KRONADB {
     script:
     def args = task.ext.args ?: ''
     """
-    ktUpdateTaxonomy.sh taxonomy
+    ktUpdateTaxonomy.sh \\
+        $args \\
+        taxonomy
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":