From a66618be98cc12eb180fd31da1d0cd31ed9f27d6 Mon Sep 17 00:00:00 2001
From: sruthipsuresh <58604926+sruthipsuresh@users.noreply.github.com>
Date: Wed, 13 Jan 2021 21:23:02 -0600
Subject: [PATCH] Delete tests/software/phantompeakqualtools directory

---
 tests/software/phantompeakqualtools/main.nf  | 12 ------------
 tests/software/phantompeakqualtools/test.yml |  9 ---------
 2 files changed, 21 deletions(-)
 delete mode 100644 tests/software/phantompeakqualtools/main.nf
 delete mode 100644 tests/software/phantompeakqualtools/test.yml

diff --git a/tests/software/phantompeakqualtools/main.nf b/tests/software/phantompeakqualtools/main.nf
deleted file mode 100644
index e7169d80..00000000
--- a/tests/software/phantompeakqualtools/main.nf
+++ /dev/null
@@ -1,12 +0,0 @@
-#!/usr/bin/env nextflow
-
-nextflow.enable.dsl = 2
-
-include { PHANTOMPEAKQUALTOOLS } from '../../../software/phantompeakqualtools/main.nf' addParams( options: [:] )
-
-workflow test_phantompeakqualtools {
-    def input = []
-    input = [ [ id:'test', single_end:true ], // meta map
-              [ file("${launchDir}/tests/data/bam/test.single_end.sorted.bam", checkIfExists: true) ] ]
-    PHANTOMPEAKQUALTOOLS ( input )
-}
diff --git a/tests/software/phantompeakqualtools/test.yml b/tests/software/phantompeakqualtools/test.yml
deleted file mode 100644
index d23f3d94..00000000
--- a/tests/software/phantompeakqualtools/test.yml
+++ /dev/null
@@ -1,9 +0,0 @@
-- name: Run phantompeakqualtools  test workflow
-  command: nextflow run ./tests/software/phantompeakqualtools/ -profile docker -entry test_phantompeakqualtools -c tests/config/nextflow.config
-  tags:
-    - phantompeakqualtools
-  files:
-    - path: output/phantompeakqualtools/test.spp.pdf
-    - path: output/phantompeakqualtools/test.spp.Rdata
-    - path: output/phantompeakqualtools/test.spp.out
-      md5sum: c18220e8082e695995edecc99235ec85