From a694267b4b138e4da4c98f17fcc4e4d0feff0056 Mon Sep 17 00:00:00 2001 From: Rike Date: Thu, 12 May 2022 17:01:03 +0200 Subject: [PATCH] fix empty index input --- tests/modules/gatk4/genotypegvcfs/main.nf | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/tests/modules/gatk4/genotypegvcfs/main.nf b/tests/modules/gatk4/genotypegvcfs/main.nf index 75990958..4caba697 100644 --- a/tests/modules/gatk4/genotypegvcfs/main.nf +++ b/tests/modules/gatk4/genotypegvcfs/main.nf @@ -65,7 +65,9 @@ workflow test_gatk4_genotypegvcfs_gz_input_intervals { input = [ [ id:'test' ], // meta map file(params.test_data['homo_sapiens']['illumina']['test_genome_vcf_gz'], checkIfExists: true), file(params.test_data['homo_sapiens']['illumina']['test_genome_vcf_gz_tbi'], checkIfExists: true), - file(params.test_data['homo_sapiens']['genome']['genome_bed'], checkIfExists: true) ] + file(params.test_data['homo_sapiens']['genome']['genome_bed'], checkIfExists: true) , + [] + ] fasta = file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true) fai = file(params.test_data['homo_sapiens']['genome']['genome_fasta_fai'], checkIfExists: true)