From e9e81e8691e6f4700811bdb8cad06a95eb1cb51e Mon Sep 17 00:00:00 2001 From: drpatelh Date: Mon, 12 Oct 2020 17:47:13 +0100 Subject: [PATCH] Revert RSeQC version --- software/rseqc/bamstat/main.nf | 6 +++--- software/rseqc/inferexperiment/main.nf | 6 +++--- software/rseqc/innerdistance/main.nf | 6 +++--- software/rseqc/junctionannotation/main.nf | 6 +++--- software/rseqc/junctionsaturation/main.nf | 6 +++--- software/rseqc/readdistribution/main.nf | 6 +++--- software/rseqc/readduplication/main.nf | 6 +++--- 7 files changed, 21 insertions(+), 21 deletions(-) diff --git a/software/rseqc/bamstat/main.nf b/software/rseqc/bamstat/main.nf index 83c47eae..037e28b6 100644 --- a/software/rseqc/bamstat/main.nf +++ b/software/rseqc/bamstat/main.nf @@ -8,10 +8,10 @@ process RSEQC_BAMSTAT { mode: params.publish_dir_mode, saveAs: { filename -> saveFiles(filename:filename, options:options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) } - container "quay.io/biocontainers/rseqc:4.0.0--py38h0213d0e_0" - //container "https://depot.galaxyproject.org/singularity/rseqc:4.0.0--py38h0213d0e_0" + container "quay.io/biocontainers/rseqc:3.0.1--py37h516909a_1" + //container "https://depot.galaxyproject.org/singularity/rseqc:3.0.1--py37h516909a_1" - conda (params.conda ? "bioconda::rseqc=4.0.0" : null) + conda (params.conda ? "bioconda::rseqc=3.0.1" : null) input: tuple val(meta), path(bam) diff --git a/software/rseqc/inferexperiment/main.nf b/software/rseqc/inferexperiment/main.nf index c97bd3eb..d81d7819 100644 --- a/software/rseqc/inferexperiment/main.nf +++ b/software/rseqc/inferexperiment/main.nf @@ -8,10 +8,10 @@ process RSEQC_INFEREXPERIMENT { mode: params.publish_dir_mode, saveAs: { filename -> saveFiles(filename:filename, options:options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) } - container "quay.io/biocontainers/rseqc:4.0.0--py38h0213d0e_0" - //container "https://depot.galaxyproject.org/singularity/rseqc:4.0.0--py38h0213d0e_0" + container "quay.io/biocontainers/rseqc:3.0.1--py37h516909a_1" + //container "https://depot.galaxyproject.org/singularity/rseqc:3.0.1--py37h516909a_1" - conda (params.conda ? "bioconda::rseqc=4.0.0" : null) + conda (params.conda ? "bioconda::rseqc=3.0.1" : null) input: tuple val(meta), path(bam) diff --git a/software/rseqc/innerdistance/main.nf b/software/rseqc/innerdistance/main.nf index 618a71d1..9d76253c 100644 --- a/software/rseqc/innerdistance/main.nf +++ b/software/rseqc/innerdistance/main.nf @@ -8,10 +8,10 @@ process RSEQC_INNERDISTANCE { mode: params.publish_dir_mode, saveAs: { filename -> saveFiles(filename:filename, options:options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) } - container "quay.io/biocontainers/rseqc:4.0.0--py38h0213d0e_0" - //container "https://depot.galaxyproject.org/singularity/rseqc:4.0.0--py38h0213d0e_0" + container "quay.io/biocontainers/rseqc:3.0.1--py37h516909a_1" + //container "https://depot.galaxyproject.org/singularity/rseqc:3.0.1--py37h516909a_1" - conda (params.conda ? "bioconda::rseqc=4.0.0" : null) + conda (params.conda ? "bioconda::rseqc=3.0.1" : null) input: tuple val(meta), path(bam) diff --git a/software/rseqc/junctionannotation/main.nf b/software/rseqc/junctionannotation/main.nf index 2ccd5267..d446a991 100644 --- a/software/rseqc/junctionannotation/main.nf +++ b/software/rseqc/junctionannotation/main.nf @@ -8,10 +8,10 @@ process RSEQC_JUNCTIONANNOTATION { mode: params.publish_dir_mode, saveAs: { filename -> saveFiles(filename:filename, options:options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) } - container "quay.io/biocontainers/rseqc:4.0.0--py38h0213d0e_0" - //container "https://depot.galaxyproject.org/singularity/rseqc:4.0.0--py38h0213d0e_0" + container "quay.io/biocontainers/rseqc:3.0.1--py37h516909a_1" + //container "https://depot.galaxyproject.org/singularity/rseqc:3.0.1--py37h516909a_1" - conda (params.conda ? "bioconda::rseqc=4.0.0" : null) + conda (params.conda ? "bioconda::rseqc=3.0.1" : null) input: tuple val(meta), path(bam) diff --git a/software/rseqc/junctionsaturation/main.nf b/software/rseqc/junctionsaturation/main.nf index 01fbce8d..4a7b2af6 100644 --- a/software/rseqc/junctionsaturation/main.nf +++ b/software/rseqc/junctionsaturation/main.nf @@ -8,10 +8,10 @@ process RSEQC_JUNCTIONSATURATION { mode: params.publish_dir_mode, saveAs: { filename -> saveFiles(filename:filename, options:options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) } - container "quay.io/biocontainers/rseqc:4.0.0--py38h0213d0e_0" - //container "https://depot.galaxyproject.org/singularity/rseqc:4.0.0--py38h0213d0e_0" + container "quay.io/biocontainers/rseqc:3.0.1--py37h516909a_1" + //container "https://depot.galaxyproject.org/singularity/rseqc:3.0.1--py37h516909a_1" - conda (params.conda ? "bioconda::rseqc=4.0.0" : null) + conda (params.conda ? "bioconda::rseqc=3.0.1" : null) input: tuple val(meta), path(bam) diff --git a/software/rseqc/readdistribution/main.nf b/software/rseqc/readdistribution/main.nf index 9206d856..87b2f888 100644 --- a/software/rseqc/readdistribution/main.nf +++ b/software/rseqc/readdistribution/main.nf @@ -8,10 +8,10 @@ process RSEQC_READDISTRIBUTION { mode: params.publish_dir_mode, saveAs: { filename -> saveFiles(filename:filename, options:options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) } - container "quay.io/biocontainers/rseqc:4.0.0--py38h0213d0e_0" - //container "https://depot.galaxyproject.org/singularity/rseqc:4.0.0--py38h0213d0e_0" + container "quay.io/biocontainers/rseqc:3.0.1--py37h516909a_1" + //container "https://depot.galaxyproject.org/singularity/rseqc:3.0.1--py37h516909a_1" - conda (params.conda ? "bioconda::rseqc=4.0.0" : null) + conda (params.conda ? "bioconda::rseqc=3.0.1" : null) input: tuple val(meta), path(bam) diff --git a/software/rseqc/readduplication/main.nf b/software/rseqc/readduplication/main.nf index a33918cc..b2aa8464 100644 --- a/software/rseqc/readduplication/main.nf +++ b/software/rseqc/readduplication/main.nf @@ -8,10 +8,10 @@ process RSEQC_READDUPLICATION { mode: params.publish_dir_mode, saveAs: { filename -> saveFiles(filename:filename, options:options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) } - container "quay.io/biocontainers/rseqc:4.0.0--py38h0213d0e_0" - //container "https://depot.galaxyproject.org/singularity/rseqc:4.0.0--py38h0213d0e_0" + container "quay.io/biocontainers/rseqc:3.0.1--py37h516909a_1" + //container "https://depot.galaxyproject.org/singularity/rseqc:3.0.1--py37h516909a_1" - conda (params.conda ? "bioconda::rseqc=4.0.0" : null) + conda (params.conda ? "bioconda::rseqc=3.0.1" : null) input: tuple val(meta), path(bam)