From a6d6c0b973883952229b2f2b7f788ae6bff4e8fc Mon Sep 17 00:00:00 2001
From: Harshil Patel <drpatelh@users.noreply.github.com>
Date: Tue, 16 Feb 2021 22:08:11 +0000
Subject: [PATCH] Update software/gatk/createsequencedictionary/main.nf

---
 software/gatk/createsequencedictionary/main.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/software/gatk/createsequencedictionary/main.nf b/software/gatk/createsequencedictionary/main.nf
index f6350226..dd4f418c 100644
--- a/software/gatk/createsequencedictionary/main.nf
+++ b/software/gatk/createsequencedictionary/main.nf
@@ -37,7 +37,7 @@ process GATK_CREATESEQUENCEDICTIONARY {
     gatk --java-options "-Xmx${avail_mem}g" \\
         CreateSequenceDictionary \\
         --REFERENCE $fasta \\
-        --URI $fasta
+        --URI $fasta \\
         $options.args
 
     echo \$(gatk CreateSequenceDictionary --version 2>&1) | sed 's/^.*(GATK) v//; s/ HTSJDK.*\$//' > ${software}.version.txt