diff --git a/software/bwa/index/meta.yml b/software/bwa/index/meta.yml index 49fa3c44..996ec439 100644 --- a/software/bwa/index/meta.yml +++ b/software/bwa/index/meta.yml @@ -1,25 +1,52 @@ -name: bwa index -description: create indexes for BWA from a fasta file +name: bwa_index +description: Create BWA index for reference genome keywords: - - index + - index + - fasta + - genome tools: - - bwa: - description: | - BWA is a software package for mapping DNA sequences against a large reference genome, such as the human genome. - homepage: http://bio-bwa.sourceforge.net/ - documentation: http://www.htslib.org/doc/samtools.html - arxiv: arXiv:1303.3997 + - bwa: + description: | + BWA is a software package for mapping DNA sequences against + a large reference genome, such as the human genome. + homepage: http://bio-bwa.sourceforge.net/ + documentation: http://www.htslib.org/doc/samtools.html + arxiv: arXiv:1303.3997 +params: + - outdir: + type: string + description: | + The pipeline's output directory. By default, the module will + output files into `$params.outdir/` + - publish_dir_mode: + type: string + description: | + Value for the Nextflow `publishDir` mode parameter. + Available: symlink, rellink, link, copy, copyNoFollow, move. + - conda: + type: boolean + description: | + Run the module with Conda using the software specified + via the `conda` directive input: - - - - input: - type: file - description: Input fasta file - pattern: "*.{fasta,fa}" + - fasta: + type: file + description: | + Input genome fasta file + - options: + type: map + description: | + Groovy Map containing module options for passing command-line arguments and + output file paths. output: - - - - index: - type: file - description: bwa indexes file - pattern: "*.{fasta,fa}.{amb,ann,bwt,pac,sa}" + - index: + type: file + description: BWA genome index files + pattern: "*.{fasta}.{amb,ann,bwt,pac,sa}" + - version: + type: file + description: File containing software version + pattern: "*.version.txt" authors: - - "@maxulysse" + - "@drpatelh" + - "@maxulysse"