diff --git a/software/preseq/lcextrap/main.nf b/software/preseq/lcextrap/main.nf index 7be82eb8..7f746c9f 100644 --- a/software/preseq/lcextrap/main.nf +++ b/software/preseq/lcextrap/main.nf @@ -37,7 +37,7 @@ process PRESEQ_LCEXTRAP { $options.args \\ $paired_end \\ -output ${prefix}.ccurve.txt \\ - $bam + -bam $bam cp .command.err ${prefix}.command.log echo \$(preseq 2>&1) | sed 's/^.*Version: //; s/Usage:.*\$//' > ${software}.version.txt