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Fix test data paths for hmmer/hmmalign (#1272)

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* fix: remove left-over unnecessary code

* Update main.nf
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James A. Fellows Yates 2022-02-10 13:14:44 +01:00 committed by GitHub
parent d0240fee1e
commit a9050b8ab6
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tests/modules/hmmer/hmmalign/main.nf
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@ -8,10 +8,10 @@ workflow test_hmmer_hmmalign {
input = [ input = [
[ id:'test' ], // meta map [ id:'test' ], // meta map
file('https://raw.githubusercontent.com/erikrikarddaniel/test-datasets/modules/data/delete_me/e_coli_k12_16s.fna') // Change to params.test_data syntax after the data is included in tests/config/test_data.config file('https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/delete_me/e_coli_k12_16s.fna') // Change to params.test_data syntax after the data is included in tests/config/test_data.config
] ]
hmm = file('https://raw.githubusercontent.com/erikrikarddaniel/test-datasets/modules/data/delete_me/bac.16S_rRNA.hmm') hmm = file('https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/delete_me/bac.16S_rRNA.hmm')
HMMER_HMMALIGN ( input, hmm ) HMMER_HMMALIGN ( input, hmm )
} }