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bclconvert: Update Dockerfile (#1819)

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* Update Dockerfile

* Output only top level InterOp files

* Update tag
This commit is contained in:
Matthias De Smet 2022-06-28 12:11:16 +02:00 committed by GitHub
parent 009f7c691c
commit a9521de5ac
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2 changed files with 4 additions and 2 deletions
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2
modules/bclconvert/Dockerfile
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@ -11,5 +11,7 @@ RUN apt-get update \
&& apt-get install -y \ && apt-get install -y \
procps \ procps \
&& apt-get clean -y && rm -rf /var/lib/apt/lists/* && apt-get clean -y && rm -rf /var/lib/apt/lists/*
# Link hostname cmd to fix hardcoded path
RUN ln -s /bin/hostname /usr/bin/hostname
COPY bcl-convert /usr/local/bin/bcl-convert COPY bcl-convert /usr/local/bin/bcl-convert
RUN chmod +x /usr/local/bin/bcl-convert RUN chmod +x /usr/local/bin/bcl-convert

4
modules/bclconvert/main.nf
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@ -1,5 +1,5 @@
process BCLCONVERT { process BCLCONVERT {
tag "$meta.id" tag {"$meta.lane" ? "$meta.id"+"."+"$meta.lane" : "$meta.id" }
label 'process_high' label 'process_high'
if (params.enable_conda) { if (params.enable_conda) {
@ -17,7 +17,7 @@ process BCLCONVERT {
tuple val(meta), path("Undetermined_S0_L00?_I?_00?.fastq.gz") ,optional:true, emit: undetermined_idx tuple val(meta), path("Undetermined_S0_L00?_I?_00?.fastq.gz") ,optional:true, emit: undetermined_idx
tuple val(meta), path("Reports") ,emit: reports tuple val(meta), path("Reports") ,emit: reports
tuple val(meta), path("Logs") ,emit: logs tuple val(meta), path("Logs") ,emit: logs
tuple val(meta), path("**.bin") ,emit: interop tuple val(meta), path("**/InterOp/*.bin") ,emit: interop
path("versions.yml") ,emit: versions path("versions.yml") ,emit: versions
when: when: