millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-22 02:58:17 +00:00
Code Issues Releases Packages Activity

bclconvert: Update Dockerfile (#1819)

Browse source 
* Update Dockerfile

* Output only top level InterOp files

* Update tag
This commit is contained in:
Matthias De Smet 2022-06-28 12:11:16 +02:00 committed by GitHub
parent 009f7c691c
commit a9521de5ac
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
2 changed files with 4 additions and 2 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

2
modules/bclconvert/Dockerfile
View file

@ -11,5 +11,7 @@ RUN apt-get update \
&& apt-get install -y \
procps \
&& apt-get clean -y && rm -rf /var/lib/apt/lists/*
# Link hostname cmd to fix hardcoded path
RUN ln -s /bin/hostname /usr/bin/hostname
COPY bcl-convert /usr/local/bin/bcl-convert
RUN chmod +x /usr/local/bin/bcl-convert

4
modules/bclconvert/main.nf
View file

@ -1,5 +1,5 @@
process BCLCONVERT {
tag "$meta.id"
tag {"$meta.lane" ? "$meta.id"+"."+"$meta.lane" : "$meta.id" }
label 'process_high'
if (params.enable_conda) {
@ -17,7 +17,7 @@ process BCLCONVERT {
tuple val(meta), path("Undetermined_S0_L00?_I?_00?.fastq.gz") ,optional:true, emit: undetermined_idx
tuple val(meta), path("Reports") ,emit: reports
tuple val(meta), path("Logs") ,emit: logs
tuple val(meta), path("**.bin") ,emit: interop
tuple val(meta), path("**/InterOp/*.bin") ,emit: interop
path("versions.yml") ,emit: versions
when: