From 360ac115f7a8d6a07b40a05fc681ff0a746bdbd4 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Veit=20Schw=C3=A4mmle?= Date: Tue, 8 Feb 2022 10:02:48 +0100 Subject: [PATCH 1/3] Update modules/maxquant/lfq/meta.yml Co-authored-by: Gregor Sturm --- modules/maxquant/lfq/meta.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/maxquant/lfq/meta.yml b/modules/maxquant/lfq/meta.yml index 3596e3f1..3eec1638 100644 --- a/modules/maxquant/lfq/meta.yml +++ b/modules/maxquant/lfq/meta.yml @@ -39,7 +39,7 @@ output: description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - - version: + - versions: type: file description: File containing software version pattern: "versions.yml" From cb1f0b7fc3301ca8eba322dab7d925ecc3b267a4 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Veit=20Schw=C3=A4mmle?= Date: Tue, 8 Feb 2022 10:02:54 +0100 Subject: [PATCH 2/3] Update modules/maxquant/lfq/main.nf Co-authored-by: Gregor Sturm --- modules/maxquant/lfq/main.nf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/maxquant/lfq/main.nf b/modules/maxquant/lfq/main.nf index 05419d46..7c578241 100644 --- a/modules/maxquant/lfq/main.nf +++ b/modules/maxquant/lfq/main.nf @@ -14,7 +14,7 @@ process MAXQUANT_LFQ { output: tuple val(meta), path("*.txt"), emit: maxquant_txt - path "versions.yml" , emit: version + path "versions.yml" , emit: versions script: def args = task.ext.args ?: '' From 8363559ba5e4410873b5c599e3f73c5cb7181862 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Veit=20Schw=C3=A4mmle?= Date: Tue, 8 Feb 2022 10:03:02 +0100 Subject: [PATCH 3/3] Update tests/config/test_data.config Co-authored-by: Gregor Sturm --- tests/config/test_data.config | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/tests/config/test_data.config b/tests/config/test_data.config index 42adf63f..a8cc2137 100644 --- a/tests/config/test_data.config +++ b/tests/config/test_data.config @@ -388,8 +388,8 @@ params { ups_file2 = "${test_data_dir}/proteomics/msspectra/OVEMB150205_14.raw" } 'database' { - yeast_ups = "${test_data_dir}/proteomics/database/yeast_UPS.fasta" - } + yeast_ups = "${test_data_dir}/proteomics/database/yeast_UPS.fasta" + } 'parameter' { maxquant = "${test_data_dir}/proteomics/parameter/mqpar.xml" }