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update: BWA/ALN (#653)

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* Specify more guidelines on input channels

* Linting

* Updates based on code review

* Update README.md

* Fix broken sentence

* Remove reads from output channel following module guidelines. Should do a .join() based on $meta, to reassociate.

Co-authored-by: Gregor Sturm <mail@gregor-sturm.de>
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James A. Fellows Yates 2021-08-17 15:55:54 +02:00 committed by GitHub
parent bc7b5b3a12
commit ab93a1afa7
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2 changed files with 2 additions and 2 deletions
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modules/bwa/aln/main.nf
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@ -23,7 +23,7 @@ process BWA_ALN {
path index path index
output: output:
tuple val(meta), path(reads), path("*.sai"), emit: sai tuple val(meta), path("*.sai"), emit: sai
path "*.version.txt" , emit: version path "*.version.txt" , emit: version
script: script:

2
modules/bwa/aln/meta.yml
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@ -47,7 +47,7 @@ output:
pattern: "*.{version.txt}" pattern: "*.{version.txt}"
- sai: - sai:
type: file type: file
description: SA coordinate file description: Single or paired SA coordinate files
pattern: "*.sai" pattern: "*.sai"
authors: authors: