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tests: add stub

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This commit is contained in:
Lucas Taniguti 2022-06-08 08:46:22 -03:00
parent f26979c44e
commit abaec30889
2 changed files with 26 additions and 5 deletions
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12
modules/haplocheck/main.nf
View file

@ -29,4 +29,16 @@ process HAPLOCHECK {
haplocheck: \$(echo \$(haplocheck --version 2>&1) | cut -f 2 -d " " )
END_VERSIONS
"""
stub:
def prefix = task.ext.prefix ?: "${meta.id}"
"""
touch $prefix.txt
touch $prefix.html
cat <<-END_VERSIONS > versions.yml
"${task.process}":
haplocheck: \$(echo \$(haplocheck --version 2>&1) | cut -f 2 -d " " )
END_VERSIONS
"""
}

15
tests/modules/haplocheck/test.yml
View file

@ -1,11 +1,20 @@
- name: "haplocheck"
- name: haplocheck test_haplocheck
command: nextflow run ./tests/modules/haplocheck -entry test_haplocheck -c ./tests/config/nextflow.config -c ./tests/modules/haplocheck/nextflow.config
tags:
- "haplocheck"
- haplocheck
files:
- path: "output/haplocheck/test.html"
- path: output/haplocheck/test.html
md5sum: 59d69052c86edff0301816956eaf4d5f
- path: output/haplocheck/test.raw.txt
md5sum: 69f4e5b28a59b97fc19eb8e8b650d9d5
- path: output/haplocheck/versions.yml
md5sum: 94e2fa3ceb3946487319f92cea08c942
- name: haplocheck test_haplocheck using stubs
command: nextflow run ./tests/modules/haplocheck -entry test_haplocheck -c ./tests/config/nextflow.config -c ./tests/modules/haplocheck/nextflow.config -stub-run
tags:
- haplocheck
files:
- path: output/haplocheck/test.html
- path: output/haplocheck/test.raw.txt
- path: output/haplocheck/versions.yml