From adc0f71904d27e46e09447e5624d58ba918f4e9f Mon Sep 17 00:00:00 2001 From: veitveit Date: Mon, 3 Jan 2022 11:33:17 +0100 Subject: [PATCH] added pytest --- tests/config/pytest_modules.yml | 1486 +++++++++++++++++++++++++++++++ 1 file changed, 1486 insertions(+) create mode 100644 tests/config/pytest_modules.yml diff --git a/tests/config/pytest_modules.yml b/tests/config/pytest_modules.yml new file mode 100644 index 00000000..04be83db --- /dev/null +++ b/tests/config/pytest_modules.yml @@ -0,0 +1,1486 @@ +abacas: + - modules/abacas/** + - tests/modules/abacas/** + +adapterremoval: + - modules/adapterremoval/** + - tests/modules/adapterremoval/** + +agrvate: + - modules/agrvate/** + - tests/modules/agrvate/** + +allelecounter: + - modules/allelecounter/** + - tests/modules/allelecounter/** + +amps: + - modules/amps/** + - tests/modules/amps/** + +arriba: + - modules/arriba/** + - tests/modules/arriba/** + +artic/guppyplex: + - modules/artic/guppyplex/** + - tests/modules/artic/guppyplex/** + +artic/minion: + - modules/artic/minion/** + - tests/modules/artic/minion/** + +assemblyscan: + - modules/assemblyscan/** + - tests/modules/assemblyscan/** + +ataqv/ataqv: + - modules/ataqv/ataqv/** + - tests/modules/ataqv/ataqv/** + +bakta: + - modules/bakta/** + - tests/modules/bakta/** + +bamaligncleaner: + - modules/bamaligncleaner/** + - tests/modules/bamaligncleaner/** + +bamtools/split: + - modules/bamtools/split/** + - tests/modules/bamtools/split/** + +bamutil/trimbam: + - modules/bamutil/trimbam/** + - tests/modules/bamutil/trimbam/** + +bandage/image: + - modules/bandage/image/** + - tests/modules/bandage/image/** + +bbmap/align: + - modules/bbmap/align/** + - tests/modules/bbmap/align/** + +bbmap/bbduk: + - modules/bbmap/bbduk/** + - tests/modules/bbmap/bbduk/** + +bbmap/bbsplit: + - modules/bbmap/bbsplit/** + - tests/modules/bbmap/bbsplit/** + +bbmap/index: + - modules/bbmap/index/** + - tests/modules/bbmap/index/** + +bcftools/concat: + - modules/bcftools/concat/** + - tests/modules/bcftools/concat/** + +bcftools/consensus: + - modules/bcftools/consensus/** + - tests/modules/bcftools/consensus/** + +bcftools/filter: + - modules/bcftools/filter/** + - tests/modules/bcftools/filter/** + +bcftools/index: + - modules/bcftools/index/** + - tests/modules/bcftools/index** + +bcftools/isec: + - modules/bcftools/isec/** + - tests/modules/bcftools/isec/** + +bcftools/merge: + - modules/bcftools/merge/** + - tests/modules/bcftools/merge/** + +bcftools/mpileup: + - modules/bcftools/mpileup/** + - tests/modules/bcftools/mpileup/** + +bcftools/norm: + - modules/bcftools/norm/** + - tests/modules/bcftools/norm/** + +bcftools/query: + - modules/bcftools/query/** + - tests/modules/bcftools/query/** + +bcftools/reheader: + - modules/bcftools/reheader/** + - tests/modules/bcftools/reheader/** + +bcftools/stats: + - modules/bcftools/stats/** + - tests/modules/bcftools/stats/** + +bcftools/view: + - modules/bcftools/view/** + - tests/modules/bcftools/view/** + +bedtools/bamtobed: + - modules/bedtools/bamtobed/** + - tests/modules/bedtools/bamtobed/** + +bedtools/complement: + - modules/bedtools/complement/** + - tests/modules/bedtools/complement/** + +bedtools/genomecov: + - modules/bedtools/genomecov/** + - tests/modules/bedtools/genomecov/** + +bedtools/getfasta: + - modules/bedtools/getfasta/** + - tests/modules/bedtools/getfasta/** + +bedtools/intersect: + - modules/bedtools/intersect/** + - tests/modules/bedtools/intersect/** + +bedtools/makewindows: + - modules/bedtools/makewindows/** + - tests/modules/bedtools/makewindows/** + +bedtools/maskfasta: + - modules/bedtools/maskfasta/** + - tests/modules/bedtools/maskfasta/** + +bedtools/merge: + - modules/bedtools/merge/** + - tests/modules/bedtools/merge/** + +bedtools/slop: + - modules/bedtools/slop/** + - tests/modules/bedtools/slop/** + +bedtools/sort: + - modules/bedtools/sort/** + - tests/modules/bedtools/sort/** + +bedtools/subtract: + - modules/bedtools/subtract/** + - tests/modules/bedtools/subtract/** + +bismark/align: + - modules/bismark/align/** + - modules/bismark/genomepreparation/** + - tests/modules/bismark/align/** + +bismark/deduplicate: + - modules/bismark/deduplicate/** + - tests/modules/bismark/deduplicate/** + +bismark/genomepreparation: + - modules/bismark/genomepreparation/** + - tests/modules/bismark/genomepreparation/** + +bismark/methylationextractor: + - modules/bismark/methylationextractor/** + - modules/bismark/genomepreparation/** + - tests/modules/bismark/methylationextractor/** + +bismark/report: + - modules/bismark/genomepreparation/** + - modules/bismark/align/** + - modules/bismark/deduplicate/** + - modules/bismark/methylationextractor/** + - modules/bismark/report/** + - tests/modules/bismark/report/** + +bismark/summary: + - modules/bismark/genomepreparation/** + - modules/bismark/align/** + - modules/bismark/deduplicate/** + - modules/bismark/methylationextractor/** + - modules/bismark/summary/** + - tests/modules/bismark/summary/** + +blast/blastn: + - modules/blast/blastn/** + - tests/modules/blast/blastn/** + +blast/makeblastdb: + - modules/blast/makeblastdb/** + - tests/modules/blast/makeblastdb/** + +bowtie/align: + - modules/bowtie/align/** + - modules/bowtie/build/** + - tests/modules/bowtie/align/** + +bowtie/build: + - modules/bowtie/build/** + - tests/modules/bowtie/build_test/** + +bowtie2/align: + - modules/bowtie2/align/** + - modules/bowtie2/build/** + - tests/modules/bowtie2/align/** + +bowtie2/build: + - modules/bowtie2/build/** + - tests/modules/bowtie2/build_test/** + +bwa/aln: + - modules/bwa/aln/** + - tests/modules/bwa/aln/** + +bwa/index: + - modules/bwa/index/** + - tests/modules/bwa/index/** + +bwa/mem: + - modules/bwa/mem/** + - tests/modules/bwa/mem/** + +bwa/sampe: + - modules/bwa/sampe/** + - tests/modules/bwa/sampe/** + +bwa/samse: + - modules/bwa/samse/** + - tests/modules/bwa/samse/** + +bwamem2/index: + - modules/bwamem2/index/** + - tests/modules/bwamem2/index/** + +bwamem2/mem: + - modules/bwamem2/mem/** + - tests/modules/bwamem2/mem/** + +bwameth/align: + - modules/bwameth/align/** + - tests/modules/bwameth/align/** + +bwameth/index: + - modules/bwameth/index/** + - tests/modules/bwameth/index/** + +cat/cat: + - modules/cat/cat/** + - tests/modules/cat/cat/** + +cat/fastq: + - modules/cat/fastq/** + - tests/modules/cat/fastq/** + +cellranger/count: + - modules/cellranger/count/** + - tests/modules/cellranger/count/** + - modules/cellranger/mkref/** + - tests/modules/cellranger/mkref/** + - modules/cellranger/gtf/** + - tests/modules/cellranger/gtf/** + +cellranger/gtf: + - modules/cellranger/gtf/** + - tests/modules/cellranger/gtf/** + +cellranger/mkref: + - modules/cellranger/mkref/** + - tests/modules/cellranger/mkref/** + - modules/cellranger/gtf/** + - tests/modules/cellranger/gtf/** + +checkm/lineagewf: + - modules/checkm/lineagewf/** + - tests/modules/checkm/lineagewf/** + +chromap/chromap: + - modules/chromap/chromap/** + - tests/modules/chromap/chromap/** + +chromap/index: + - modules/chromap/index/** + - tests/modules/chromap/index/** + +clonalframeml: + - modules/clonalframeml/** + - tests/modules/clonalframeml/** + +cmseq/polymut: + - modules/cmseq/polymut/** + - tests/modules/cmseq/polymut/** + +cnvkit/batch: + - modules/cnvkit/batch/** + - tests/modules/cnvkit/batch/** + +cooler/cload: + - modules/cooler/cload/** + - tests/modules/cooler/cload/** + +cooler/digest: + - modules/cooler/digest/** + - tests/modules/cooler/digest/** + +cooler/dump: + - modules/cooler/dump/** + - tests/modules/cooler/dump/** + +cooler/merge: + - modules/cooler/merge/** + - tests/modules/cooler/merge/** + +cooler/zoomify: + - modules/cooler/zoomify/** + - tests/software/cooler/zoomify/** + +csvtk/concat: + - modules/csvtk/concat/** + - tests/modules/csvtk/concat/** + +csvtk/split: + - modules/csvtk/split/** + - tests/modules/csvtk/split/** + +custom/dumpsoftwareversions: + - modules/custom/dumpsoftwareversions/** + - tests/modules/custom/dumpsoftwareversions/** + +custom/getchromsizes: + - modules/custom/getchromsizes/** + - tests/modules/custom/getchromsizes/** + +cutadapt: + - modules/cutadapt/** + - tests/modules/cutadapt/** + +damageprofiler: + - modules/damageprofiler/** + - tests/modules/damageprofiler/** + +dastool/dastool: + - modules/dastool/dastool/** + - tests/modules/dastool/dastool/** + +dastool/scaffolds2bin: + - modules/dastool/scaffolds2bin/** + - tests/modules/dastool/scaffolds2bin/** + +dedup: + - modules/dedup/** + - tests/modules/dedup/** + +deeptools/computematrix: + - modules/deeptools/computematrix/** + - tests/modules/deeptools/computematrix/** + +deeptools/plotfingerprint: + - modules/deeptools/plotfingerprint/** + - tests/modules/deeptools/plotfingerprint/** + +deeptools/plotheatmap: + - modules/deeptools/plotheatmap/** + - tests/modules/deeptools/plotheatmap/** + +deeptools/plotprofile: + - modules/deeptools/plotprofile/** + - tests/modules/deeptools/plotprofile/** + +delly/call: + - modules/delly/call/** + - tests/modules/delly/call/** + +diamond/blastp: + - modules/diamond/blastp/** + - tests/modules/diamond/blastp/** + +diamond/blastx: + - modules/diamond/blastx/** + - tests/modules/diamond/blastx/** + +diamond/makedb: + - modules/diamond/makedb/** + - tests/modules/diamond/makedb/** + +dragmap/align: + - modules/dragmap/align/** + - tests/modules/dragmap/align/** + +dragmap/hashtable: + - modules/dragmap/hashtable/** + - tests/modules/dragmap/hashtable/** + +dragonflye: + - modules/dragonflye/** + - tests/modules/dragonflye/** + +dshbio/exportsegments: + - modules/dshbio/exportsegments/** + - tests/modules/dshbio/exportsegments/** + +dshbio/filterbed: + - modules/dshbio/filterbed/** + - tests/modules/dshbio/filterbed/** + +dshbio/filtergff3: + - modules/dshbio/filtergff3/** + - tests/modules/dshbio/filtergff3/** + +dshbio/splitbed: + - modules/dshbio/splitbed/** + - tests/modules/dshbio/splitbed/** + +dshbio/splitgff3: + - modules/dshbio/splitgff3/** + - tests/modules/dshbio/splitgff3/** + +ectyper: + - modules/ectyper/** + - tests/modules/ectyper/** + +emmtyper: + - modules/emmtyper/** + - tests/modules/emmtyper/** + +ensemblvep: + - modules/ensemblvep/** + - tests/modules/ensemblvep/** + +expansionhunter: + - modules/expansionhunter/** + - tests/modules/expansionhunter/** + +fargene: + - modules/fargene/** + - tests/modules/fargene/** + +fastani: + - modules/fastani/** + - tests/modules/fastani/** + +fastp: + - modules/fastp/** + - tests/modules/fastp/** + +fastqc: + - modules/fastqc/** + - tests/modules/fastqc/** + +fastqscan: + - modules/fastqscan/** + - tests/modules/fastqscan/** + +fasttree: + - modules/fasttree/** + - tests/modules/fasttree/** + +fgbio/callmolecularconsensusreads: + - modules/fgbio/callmolecularconsensusreads/** + - tests/modules/fgbio/callmolecularconsensusreads/** + +fgbio/fastqtobam: + - modules/fgbio/fastqtobam/** + - tests/modules/fgbio/fastqtobam/** + +fgbio/groupreadsbyumi: + - modules/fgbio/groupreadsbyumi/** + - tests/modules/fgbio/groupreadsbyumi/** + +fgbio/sortbam: + - modules/fgbio/sortbam/** + - tests/modules/fgbio/sortbam/** + +filtlong: + - modules/filtlong/** + - tests/modules/filtlong/** + +flash: + - modules/flash/** + - tests/modules/flash/** + +freebayes: + - modules/freebayes/** + - tests/modules/freebayes/** + +gatk4/applybqsr: + - modules/gatk4/applybqsr/** + - tests/modules/gatk4/applybqsr/** + +gatk4/applyvqsr: + - modules/gatk4/applyvqsr/** + - tests/modules/gatk4/applyvqsr/** + +gatk4/baserecalibrator: + - modules/gatk4/baserecalibrator/** + - tests/modules/gatk4/baserecalibrator/** + +gatk4/bedtointervallist: + - modules/gatk4/bedtointervallist/** + - tests/modules/gatk4/bedtointervallist/** + +gatk4/calculatecontamination: + - modules/gatk4/calculatecontamination/** + - tests/modules/gatk4/calculatecontamination/** + +gatk4/createsequencedictionary: + - modules/gatk4/createsequencedictionary/** + - tests/modules/gatk4/createsequencedictionary/** + +gatk4/createsomaticpanelofnormals: + - modules/gatk4/createsomaticpanelofnormals/** + - tests/modules/gatk4/createsomaticpanelofnormals/** + +gatk4/estimatelibrarycomplexity: + - modules/gatk4/estimatelibrarycomplexity/** + - tests/modules/gatk4/estimatelibrarycomplexity/** + +gatk4/fastqtosam: + - modules/gatk4/fastqtosam/** + - tests/modules/gatk4/fastqtosam/** + +gatk4/filtermutectcalls: + - modules/gatk4/filtermutectcalls/** + - tests/modules/gatk4/filtermutectcalls/** + +gatk4/gatherbqsrreports: + - modules/gatk4/gatherbqsrreports/** + - tests/modules/gatk4/gatherbqsrreports/** + +gatk4/genomicsdbimport: + - modules/gatk4/genomicsdbimport/** + - tests/modules/gatk4/genomicsdbimport/** + +gatk4/genotypegvcfs: + - modules/gatk4/genotypegvcfs/** + - tests/modules/gatk4/genotypegvcfs/** + +gatk4/getpileupsummaries: + - modules/gatk4/getpileupsummaries/** + - tests/modules/gatk4/getpileupsummaries/** + +gatk4/haplotypecaller: + - modules/gatk4/haplotypecaller/** + - tests/modules/gatk4/haplotypecaller/** + +gatk4/indexfeaturefile: + - modules/gatk4/indexfeaturefile/** + - tests/modules/gatk4/indexfeaturefile/** + +gatk4/intervallisttools: + - modules/gatk4/intervallisttools/** + - tests/modules/gatk4/intervallisttools/** + +gatk4/learnreadorientationmodel: + - modules/gatk4/learnreadorientationmodel/** + - tests/modules/gatk4/learnreadorientationmodel/** + +gatk4/markduplicates: + - modules/gatk4/markduplicates/** + - tests/modules/gatk4/markduplicates/** + +gatk4/mergebamalignment: + - modules/gatk4/mergebamalignment/** + - tests/modules/gatk4/mergebamalignment/** + +gatk4/mergevcfs: + - modules/gatk4/mergevcfs/** + - tests/modules/gatk4/mergevcfs/** + +gatk4/mutect2: + - modules/gatk4/mutect2/** + - tests/modules/gatk4/mutect2/** + +gatk4/revertsam: + - modules/gatk4/revertsam/** + - tests/modules/gatk4/revertsam/** + +gatk4/samtofastq: + - modules/gatk4/samtofastq/** + - tests/modules/gatk4/samtofastq/** + +gatk4/splitncigarreads: + - modules/gatk4/splitncigarreads/** + - tests/modules/gatk4/splitncigarreads/** + +gatk4/variantfiltration: + - modules/gatk4/variantfiltration/** + - tests/modules/gatk4/variantfiltration/** + +gatk4/variantrecalibrator: + - modules/gatk4/variantrecalibrator/** + - tests/modules/gatk4/variantrecalibrator/** + +genmap/index: + - modules/genmap/index/** + - tests/modules/genmap/index/** + +genmap/mappability: + - modules/genmap/mappability/** + - tests/modules/genmap/mappability/** + +genrich: + - modules/genrich/** + - tests/modules/genrich/** + +gffread: + - modules/gffread/** + - tests/modules/gffread/** + +glnexus: + - modules/glnexus/** + - tests/modules/glnexus/** + +graphmap2/align: + - modules/graphmap2/align/** + - tests/modules/graphmap2/align/** + +graphmap2/index: + - modules/graphmap2/index/** + - tests/modules/graphmap2/index/** + +gstama/collapse: + - modules/gstama/collapse/** + - tests/modules/gstama/collapse/** + +gstama/merge: + - modules/gstama/merge/** + - tests/modules/gstama/merge/** + +gtdbtk/classifywf: + - modules/gtdbtk/classifywf/** + - tests/modules/gtdbtk/classifywf/** + +gubbins: + - modules/gubbins/** + - tests/modules/gubbins/** + +gunc/downloaddb: + - modules/gunc/downloaddb/** + - tests/modules/gunc/downloaddb/** + +gunc/run: + - modules/gunc/run/** + - tests/modules/gunc/run/** + +gunzip: + - modules/gunzip/** + - tests/modules/gunzip/** + +hicap: + - modules/hicap/** + - tests/modules/hicap/** + +hifiasm: + - modules/hifiasm/** + - tests/modules/hifiasm/** + +hisat2/align: + - modules/hisat2/align/** + - modules/hisat2/build/** + - modules/hisat2/extractsplicesites/** + - tests/modules/hisat2/align/** + +hisat2/build: + - modules/hisat2/build/** + - modules/hisat2/extractsplicesites/** + - tests/modules/hisat2/build_test/** + +hisat2/extractsplicesites: + - modules/hisat2/extractsplicesites/** + - tests/modules/hisat2/extractsplicesites/** + +hmmcopy/gccounter: + - modules/hmmcopy/gccounter/** + - tests/modules/hmmcopy/gccounter/** + +hmmcopy/generatemap: + - modules/hmmcopy/generatemap/** + - tests/modules/hmmcopy/generatemap/** + +hmmcopy/mapcounter: + - modules/hmmcopy/mapcounter/** + - tests/modules/hmmcopy/mapcounter/** + +hmmcopy/readcounter: + - modules/hmmcopy/readcounter/** + - tests/modules/hmmcopy/readcounter/** + +hmmer/hmmalign: + - modules/hmmer/hmmalign/** + - tests/modules/hmmer/hmmalign/** + +homer/annotatepeaks: + - modules/homer/annotatepeaks/** + - tests/modules/homer/annotatepeaks/** + +homer/findpeaks: + - modules/homer/findpeaks/** + - tests/modules/homer/findpeaks/** + +homer/maketagdirectory: + - modules/homer/maketagdirectory/** + - tests/modules/homer/maketagdirectory/** + +homer/makeucscfile: + - modules/homer/makeucscfile/** + - tests/modules/homer/makeucscfile/** + +idr: + - modules/idr/** + - tests/modules/idr/** + +imputeme/vcftoprs: + - modules/imputeme/vcftoprs/** + - tests/modules/imputeme/vcftoprs/** + +iqtree: + - modules/iqtree/** + - tests/modules/iqtree/** + +ismapper: + - modules/ismapper/** + - tests/modules/ismapper/** + +isoseq3/cluster: + - modules/isoseq3/cluster/** + - tests/modules/isoseq3/cluster/** + +isoseq3/refine: + - modules/isoseq3/refine/** + - tests/modules/isoseq3/refine/** + +ivar/consensus: + - modules/ivar/consensus/** + - tests/modules/ivar/consensus/** + +ivar/trim: + - modules/ivar/trim/** + - tests/modules/ivar/trim/** + +ivar/variants: + - modules/ivar/variants/** + - tests/modules/ivar/variants/** + +jupyternotebook: + - modules/jupyternotebook/** + - tests/modules/jupyternotebook/** + +kallisto/index: + - modules/kallisto/index/** + - tests/modules/kallisto/index/** + +kallistobustools/count: + - modules/kallistobustools/count/** + - tests/modules/kallistobustools/count/** + +kallistobustools/ref: + - modules/kallistobustools/ref/** + - tests/modules/kallistobustools/ref/** + +khmer/normalizebymedian: + - modules/khmer/normalizebymedian/** + - tests/modules/khmer/normalizebymedian/** + +kleborate: + - modules/kleborate/** + - tests/modules/kleborate/** + +kraken2/kraken2: + - modules/kraken2/kraken2/** + - modules/untar/** + - tests/modules/kraken2/kraken2/** + +krona/kronadb: + - modules/krona/kronadb/** + - tests/modules/krona/kronadb/** + +krona/ktimporttaxonomy: + - modules/krona/ktimporttaxonomy/** + - tests/modules/krona/ktimporttaxonomy/** + +last/dotplot: + - modules/last/dotplot/** + - tests/modules/last/dotplot/** + +last/lastal: + - modules/last/lastal/** + - tests/modules/last/lastal/** + +last/lastdb: + - modules/last/lastdb/** + - tests/modules/last/lastdb/** + +last/mafconvert: + - modules/last/mafconvert/** + - tests/modules/last/mafconvert/** + +last/mafswap: + - modules/last/mafswap/** + - tests/modules/last/mafswap/** + +last/postmask: + - modules/last/postmask/** + - tests/modules/last/postmask/** + +last/split: + - modules/last/split/** + - tests/modules/last/split/** + +last/train: + - modules/last/train/** + - tests/modules/last/train/** + +leehom: + - modules/leehom/** + - tests/modules/leehom/** + +lima: + - modules/lima/** + - tests/modules/lima/** + +lissero: + - modules/lissero/** + - tests/modules/lissero/** + +lofreq/call: + - modules/lofreq/call/** + - tests/modules/lofreq/call/** + +lofreq/callparallel: + - modules/lofreq/callparallel/** + - tests/modules/lofreq/callparallel/** + +lofreq/filter: + - modules/lofreq/filter/** + - tests/modules/lofreq/filter/** + +lofreq/indelqual: + - modules/lofreq/indelqual/** + - tests/modules/lofreq/indelqual/** + +macrel/contigs: + - modules/macrel/contigs/** + - tests/modules/macrel/contigs/** + +macs2/callpeak: + - modules/macs2/callpeak/** + - tests/modules/macs2/callpeak/** + +malt/build: + - modules/malt/build/** + - tests/modules/malt/build_test/** + +malt/run: + - modules/malt/run/** + - tests/modules/malt/run/** + +maltextract: + - modules/maltextract/** + - tests/modules/maltextract/** + +manta/germline: + - modules/manta/germline/** + - tests/modules/manta/germline/** + +manta/somatic: + - modules/manta/somatic/** + - tests/modules/manta/somatic/** + +manta/tumoronly: + - modules/manta/tumoronly/** + - tests/modules/manta/tumoronly/** + +mapdamage2: + - modules/mapdamage2/** + - tests/modules/mapdamage2/** + +mash/sketch: + - modules/mash/sketch/** + - tests/modules/mash/sketch/** + +mashtree: + - modules/mashtree/** + - tests/modules/mashtree/** + +maxbin2: + - modules/maxbin2/** + - tests/modules/maxbin2/** + +maxquant: + - modules/lfq/** + - tests/modules/maxquant/lfq/** + +medaka: + - modules/medaka/** + - tests/modules/medaka/** + +megahit: + - modules/megahit/** + - tests/modules/megahit/** + +meningotype: + - modules/meningotype/** + - tests/modules/meningotype/** + +metabat2/jgisummarizebamcontigdepths: + - modules/metabat2/jgisummarizebamcontigdepths/** + - tests/modules/metabat2/jgisummarizebamcontigdepths/** + +metabat2/metabat2: + - modules/metabat2/metabat2/** + - tests/modules/metabat2/metabat2/** + +metaphlan3: + - modules/metaphlan3/** + - tests/modules/metaphlan3/** + +methyldackel/extract: + - modules/methyldackel/extract/** + - tests/modules/methyldackel/extract/** + +methyldackel/mbias: + - modules/methyldackel/mbias/** + - tests/modules/methyldackel/mbias/** + +minia: + - modules/minia/** + - tests/modules/minia/** + +miniasm: + - modules/miniasm/** + - tests/modules/miniasm/** + +minimap2/align: + - modules/minimap2/align/** + - tests/modules/minimap2/align/** + +minimap2/index: + - modules/minimap2/index/** + - tests/modules/minimap2/index/** + +mlst: + - modules/mlst/** + - tests/modules/mlst/** + +mosdepth: + - 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