millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-11-13 05:13:09 +00:00
Code Issues Releases Packages Activity

luslab-umitools |Edited Dockerfile in umi_tools

Browse source
This commit is contained in:
Candice 2020-06-03 11:22:27 +02:00
parent 07b485eeec
commit addb4122fd
1 changed files with 1 additions and 11 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

12
tools/umi_tools/Dockerfile
View file

@ -1,23 +1,13 @@
FROM continuumio/miniconda3:4.8.2
LABEL authors="chris.cheshire@crick.ac.uk" \
description="Docker image containing all requirements for the nf-core umi_tools module"
# Install apt packages
RUN apt-get update \
&& apt-get install -y --no-install-recommends \
git=1:2.20.1-2+deb10u3 \
apt-utils=1.8.2 \
unzip=6.0-23+deb10u1 \
procps=2:3.3.15-2 \
build-essential=12.6 \
zlib1g-dev=1:1.2.11.dfsg-1 \
&& apt-get clean \
&& rm -rf /var/lib/apt/lists/*
# Install conda packages
COPY environment.yml /
RUN conda env create -f /environment.yml && conda clean -a
ENV PATH /opt/conda/envs/nfcore-umitools-0.1/bin:$PATH
# Reset work dir
WORKDIR /home
ENV PATH /opt/conda/envs/nfcore-umitools-0.1/bin:$PATH