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luslab-umitools |Edited Dockerfile in umi_tools

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Candice 2020-06-03 11:22:27 +02:00
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tools/umi_tools/Dockerfile
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@ -1,23 +1,13 @@
FROM continuumio/miniconda3:4.8.2 FROM continuumio/miniconda3:4.8.2
LABEL authors="chris.cheshire@crick.ac.uk" \ LABEL authors="chris.cheshire@crick.ac.uk" \
description="Docker image containing all requirements for the nf-core umi_tools module" description="Docker image containing all requirements for the nf-core umi_tools module"
# Install apt packages # Install apt packages
RUN apt-get update \ RUN apt-get update \
&& apt-get install -y --no-install-recommends \ && apt-get install -y --no-install-recommends \
git=1:2.20.1-2+deb10u3 \
apt-utils=1.8.2 \
unzip=6.0-23+deb10u1 \
procps=2:3.3.15-2 \ procps=2:3.3.15-2 \
build-essential=12.6 \
zlib1g-dev=1:1.2.11.dfsg-1 \
&& apt-get clean \ && apt-get clean \
&& rm -rf /var/lib/apt/lists/* && rm -rf /var/lib/apt/lists/*
# Install conda packages # Install conda packages
COPY environment.yml / COPY environment.yml /
RUN conda env create -f /environment.yml && conda clean -a RUN conda env create -f /environment.yml && conda clean -a
ENV PATH /opt/conda/envs/nfcore-umitools-0.1/bin:$PATH ENV PATH /opt/conda/envs/nfcore-umitools-0.1/bin:$PATH
# Reset work dir
WORKDIR /home