From ade6124a8442229588adb5281ab8e2889bd8cf38 Mon Sep 17 00:00:00 2001 From: drpatelh Date: Tue, 2 Feb 2021 12:35:06 +0000 Subject: [PATCH] Change tests --- tests/software/bwa/main.nf | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/tests/software/bwa/main.nf b/tests/software/bwa/main.nf index a4dcdbbf..e4b3896e 100644 --- a/tests/software/bwa/main.nf +++ b/tests/software/bwa/main.nf @@ -21,8 +21,7 @@ workflow test_bwa_mem_single_end { BWA_MEM_SE ( input, - file("${launchDir}/tests/data/index/E_coli/bwa/NC_010473.fa.{amb,ann,bwt,pac,sa}", checkIfExists: true), - file("${launchDir}/tests/data/fasta/E_coli/NC_010473.fa", checkIfExists: true) + file("${launchDir}/tests/data/index/E_coli/bwa/", checkIfExists: true) ) } @@ -38,7 +37,6 @@ workflow test_bwa_mem_paired_end { BWA_MEM_PE ( input, - file("${launchDir}/tests/data/index/E_coli/bwa/NC_010473.fa.{amb,ann,bwt,pac,sa}", checkIfExists: true), - file("${launchDir}/tests/data/fasta/E_coli/NC_010473.fa", checkIfExists: true) + file("${launchDir}/tests/data/index/E_coli/bwa/", checkIfExists: true) ) }