From af7bc743bf891f60fb000eeb79c8fb20ec51f7e7 Mon Sep 17 00:00:00 2001 From: JoseEspinosa Date: Wed, 24 Feb 2021 09:15:18 +0100 Subject: [PATCH] Correct yml file, add fasta to input and correct vcf on output --- software/bcftools/mpileup/meta.yml | 8 ++++++-- 1 file changed, 6 insertions(+), 2 deletions(-) diff --git a/software/bcftools/mpileup/meta.yml b/software/bcftools/mpileup/meta.yml index 4f137d5f..573cebb3 100644 --- a/software/bcftools/mpileup/meta.yml +++ b/software/bcftools/mpileup/meta.yml @@ -42,6 +42,10 @@ input: type: file description: Input BAM file pattern: "*.{bam}" + - fasta: + type: file + description: FASTA reference file + pattern: "*.{fasta,fa}" output: - meta: type: map @@ -50,8 +54,8 @@ output: e.g. [ id:'test', single_end:false ] - vcf: type: file - description: FASTA reference consensus file - pattern: "*.{fasta,fa}" + description: VCF gzipped output file + pattern: "*.{vcf.gz}" - tbi: type: file description: tabix index file