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veitveit 2022-01-12 16:44:28 +01:00
parent adc0f71904
commit af8e69c53a
3 changed files with 3 additions and 57978 deletions
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3
modules/maxquant/lfq/main.nf
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@ -16,7 +16,8 @@ process MAXQUANT_LFQ {
if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
container "https://depot.galaxyproject.org/singularity/maxquant:2.0.1.0--py39hdfd78af_2" container "https://depot.galaxyproject.org/singularity/maxquant:2.0.1.0--py39hdfd78af_2"
} else { } else {
container "wombatp/maxquant-pipeline:dev" # container "wombatp/maxquant-pipeline:dev"
container "quay.io/biocontainers/maxquant:2.0.1.0
} }
input: input:

57976
tests/modules/maxquant/lfq/UP000002311_559292.fasta
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2
tests/modules/maxquant/lfq/test.yml
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@ -2,7 +2,7 @@
# nf-core modules create-test-yml maxquant/lfq # nf-core modules create-test-yml maxquant/lfq
- name: maxquant lfq - name: maxquant lfq
# command: nextflow run ./tests/modules/maxquant/lfq -entry test_maxquant_lfq --paramfile ./tests/modules/maxquant/lfq/mqpar.xml --raw 'https://github.com/wombat-p/MaxQuant-Workflow/raw/dev/Nextflow/data_test/OVEMB150205_{12,14}.raw' --fasta 'https://github.com/wombat-p/MaxQuant-Workflow/raw/dev/Nextflow/data_test/ABRF_iPRG_2012_target.fasta' -c tests/config/nextflow.config # command: nextflow run ./tests/modules/maxquant/lfq -entry test_maxquant_lfq --paramfile ./tests/modules/maxquant/lfq/mqpar.xml --raw 'https://github.com/wombat-p/MaxQuant-Workflow/raw/dev/Nextflow/data_test/OVEMB150205_{12,14}.raw' --fasta 'https://github.com/wombat-p/MaxQuant-Workflow/raw/dev/Nextflow/data_test/ABRF_iPRG_2012_target.fasta' -c tests/config/nextflow.config
command: nextflow run ./tests/modules/maxquant/lfq -entry test_maxquant_lfq --paramfile ./tests/modules/maxquant/lfq/mqpar.xml --fasta 'https://raw.githubusercontent.com/wombat-p/MaxQuant-Workflow/dev/data/yeast_UPS.fasta' -c tests/config/nextflow.config command: nextflow run ./tests/modules/maxquant/lfq -entry test_maxquant_lfq --paramfile 'https://raw.githubusercontent.com/wombat-p/DSL2-data/master/nf-core-modules/test_data/maxquant/mqpar.xml' --fasta 'https://raw.githubusercontent.com/wombat-p/MaxQuant-Workflow/dev/data/yeast_UPS.fasta' -c tests/config/nextflow.config
tags: tags:
- maxquant - maxquant
- maxquant/lfq - maxquant/lfq