From b0240a014ae707b8d2d08a4f72a83db10c4a490c Mon Sep 17 00:00:00 2001 From: Edmund Miller Date: Mon, 15 Nov 2021 08:41:13 -0600 Subject: [PATCH] test(subworkflows): Update gatk_create_som_pon tags --- tests/config/pytest_modules.yml | 6 ++++-- tests/subworkflows/nf-core/gatk_create_som_pon/test.yml | 7 +++---- 2 files changed, 7 insertions(+), 6 deletions(-) diff --git a/tests/config/pytest_modules.yml b/tests/config/pytest_modules.yml index 17c93733..baaee3b8 100644 --- a/tests/config/pytest_modules.yml +++ b/tests/config/pytest_modules.yml @@ -466,7 +466,7 @@ gatk4/createsequencedictionary: - modules/gatk4/createsequencedictionary/** - tests/modules/gatk4/createsequencedictionary/** -gatk4/createsomaticpanelofnormals: +gatk4/createsomaticpanelofnormals: &gatk4/createsomaticpanelofnormals - modules/gatk4/createsomaticpanelofnormals/** - tests/modules/gatk4/createsomaticpanelofnormals/** @@ -482,7 +482,7 @@ gatk4/filtermutectcalls: - modules/gatk4/filtermutectcalls/** - tests/modules/gatk4/filtermutectcalls/** -gatk4/genomicsdbimport: +gatk4/genomicsdbimport: &gatk4/genomicsdbimport - modules/gatk4/genomicsdbimport/** - tests/modules/gatk4/genomicsdbimport/** @@ -1400,3 +1400,5 @@ subworkflows/sra_fastq: subworkflows/gatk_create_som_pon: - subworkflows/nf-core/gatk_create_som_pon/** - tests/subworkflows/nf-core/gatk_create_som_pon/** + - *gatk4/genomicsdbimport + - *gatk4/createsomaticpanelofnormals diff --git a/tests/subworkflows/nf-core/gatk_create_som_pon/test.yml b/tests/subworkflows/nf-core/gatk_create_som_pon/test.yml index a4478044..e6d80409 100644 --- a/tests/subworkflows/nf-core/gatk_create_som_pon/test.yml +++ b/tests/subworkflows/nf-core/gatk_create_som_pon/test.yml @@ -2,11 +2,10 @@ command: nextflow run ./tests/subworkflows/nf-core/gatk_create_som_pon -entry test_gatk_create_som_pon -c tests/config/nextflow.config tags: - subworkflows/gatk_create_som_pon + - gatk4 # Modules - - gatk4 - - gatk4 - - gatk4/genomicsdbimport - - gatk4/createsomaticpanelofnormals + # - gatk4/genomicsdbimport + # - gatk4/createsomaticpanelofnormals files: # gatk4 mutect2 - path: output/gatk4/test1.vcf.gz