diff --git a/software/pangolin/meta.yml b/software/pangolin/meta.yml index 51fcca63..82e157d9 100644 --- a/software/pangolin/meta.yml +++ b/software/pangolin/meta.yml @@ -1,57 +1,54 @@ name: pangolin description: Phylogenetic Assignment of Named Global Outbreak LINeages keywords: - - covid - - pangolin - - lineage + - covid + - pangolin + - lineage tools: - - star: - description: | - Phylogenetic Assignment of Named Global Outbreak LINeages - homepage: https://github.com/cov-lineages/pangolin#pangolearn-description - manual: https://github.com/cov-lineages/pangolin#pangolearn-description + - star: + description: | + Phylogenetic Assignment of Named Global Outbreak LINeages + homepage: https://github.com/cov-lineages/pangolin#pangolearn-description + manual: https://github.com/cov-lineages/pangolin#pangolearn-description params: - - outdir: - type: string - description: | - The pipeline's output directory. By default, the module will - output files into `$params.outdir/` - - publish_dir_mode: - type: string - description: | - Value for the Nextflow `publishDir` mode parameter. - Available: symlink, rellink, link, copy, copyNoFollow, move. - - enable_conda: - type: boolean - description: | - Run the module with Conda using the software specified - via the `conda` directive - - singularity_pull_docker_container: - type: boolean - description: | - Instead of directly downloading Singularity images for use with Singularity, - force the workflow to pull and convert Docker containers instead. - + - outdir: + type: string + description: | + The pipeline's output directory. By default, the module will + output files into `$params.outdir/` + - publish_dir_mode: + type: string + description: | + Value for the Nextflow `publishDir` mode parameter. + Available: symlink, rellink, link, copy, copyNoFollow, move. + - enable_conda: + type: boolean + description: | + Run the module with Conda using the software specified + via the `conda` directive + - singularity_pull_docker_container: + type: boolean + description: | + Instead of directly downloading Singularity images for use with Singularity, + force the workflow to pull and convert Docker containers instead. input: - - meta: - type: map - description: | - Groovy Map containing sample information - - fasta: - type: file - description: | - The genome assembly to be evaluated - + - meta: + type: map + description: | + Groovy Map containing sample information + - fasta: + type: file + description: | + The genome assembly to be evaluated output: - - report: - type: file - description: The lineage report - pattern: "{prefix}.lineage_report.csv" - - - version: - type: file - description: File containing software version - pattern: "*.{version.txt}" - + - report: + type: file + description: Pangolin lineage report + pattern: "*.{csv}" + - version: + type: file + description: File containing software version + pattern: "*.{version.txt}" authors: - - "@kevinmenden" + - "@kevinmenden" + - "@drpatelh"