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removing kronadb module from testing ktimporttaxonomy test - NB: temporarily using test db while testdb is added to test-datasets
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1 changed files with 4 additions and 4 deletions
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@ -12,9 +12,9 @@ workflow test_krona_ktimporttaxonomy_reads {
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[ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['metagenome']['classified_reads_assignment'], checkIfExists: true)
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]
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taxonomy = file("https://raw.githubusercontent.com/lescai/test-datasets/modules/data/genomics/sarscov2/metagenome/krona_taxonomy.tab")
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DOWNLOAD_DB()
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TAXONOMY_READS ( input, DOWNLOAD_DB.out.db )
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TAXONOMY_READS ( input, taxonomy )
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}
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workflow test_krona_ktimporttaxonomy_report {
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@ -23,7 +23,7 @@ workflow test_krona_ktimporttaxonomy_report {
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[ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['metagenome']['kraken_report'], checkIfExists: true)
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]
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taxonomy = file("https://raw.githubusercontent.com/lescai/test-datasets/modules/data/genomics/sarscov2/metagenome/krona_taxonomy.tab")
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DOWNLOAD_DB()
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TAXONOMY_REPORT ( input, DOWNLOAD_DB.out.db )
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TAXONOMY_REPORT ( input, taxonomy )
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}
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