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removing kronadb module from testing ktimporttaxonomy test - NB: temporarily using test db while testdb is added to test-datasets

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This commit is contained in:
Carpanzano 2022-05-02 18:16:08 +02:00
parent c07ae8c483
commit b0a2d36ec1
1 changed files with 4 additions and 4 deletions
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8
tests/modules/krona/ktimporttaxonomy/main.nf
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@ -12,9 +12,9 @@ workflow test_krona_ktimporttaxonomy_reads {
[ id:'test', single_end:false ], // meta map [ id:'test', single_end:false ], // meta map
file(params.test_data['sarscov2']['metagenome']['classified_reads_assignment'], checkIfExists: true) file(params.test_data['sarscov2']['metagenome']['classified_reads_assignment'], checkIfExists: true)
] ]
taxonomy = file("https://raw.githubusercontent.com/lescai/test-datasets/modules/data/genomics/sarscov2/metagenome/krona_taxonomy.tab")
DOWNLOAD_DB() TAXONOMY_READS ( input, taxonomy )
TAXONOMY_READS ( input, DOWNLOAD_DB.out.db )
} }
workflow test_krona_ktimporttaxonomy_report { workflow test_krona_ktimporttaxonomy_report {
@ -23,7 +23,7 @@ workflow test_krona_ktimporttaxonomy_report {
[ id:'test', single_end:false ], // meta map [ id:'test', single_end:false ], // meta map
file(params.test_data['sarscov2']['metagenome']['kraken_report'], checkIfExists: true) file(params.test_data['sarscov2']['metagenome']['kraken_report'], checkIfExists: true)
] ]
taxonomy = file("https://raw.githubusercontent.com/lescai/test-datasets/modules/data/genomics/sarscov2/metagenome/krona_taxonomy.tab")
DOWNLOAD_DB() TAXONOMY_REPORT ( input, taxonomy )
TAXONOMY_REPORT ( input, DOWNLOAD_DB.out.db )
} }