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drpatelh 2020-08-07 16:42:56 +01:00
parent 08723c9d61
commit b22ec332e9
3 changed files with 90 additions and 0 deletions
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30
.github/workflows/picard_collectmultiplemetrics.yml vendored Normal file
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name: picard_collectmultiplemetrics.yml
on:
push:
paths:
- software/picard/collectmultiplemetrics/**
- .github/workflows/picard_collectmultiplemetrics.yml
- tests
pull_request:
paths:
- software/picard/collectmultiplemetrics/**
- .github/workflows/picard_collectmultiplemetrics.yml
- tests
jobs:
ci_test:
runs-on: ubuntu-latest
env:
NXF_ANSI_LOG: false
steps:
- uses: actions/checkout@v2
- name: Install Nextflow
run: |
export NXF_VER="20.07.1"
wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/
# Test the module
- run: nextflow run ./software/picard/collectmultiplemetrics/test/ -profile docker

30
.github/workflows/picard_markduplicates.yml vendored Normal file
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name: picard_markduplicates
on:
push:
paths:
- software/picard/markduplicates/**
- .github/workflows/picard_markduplicates.yml
- tests
pull_request:
paths:
- software/picard/markduplicates/**
- .github/workflows/picard_markduplicates.yml
- tests
jobs:
ci_test:
runs-on: ubuntu-latest
env:
NXF_ANSI_LOG: false
steps:
- uses: actions/checkout@v2
- name: Install Nextflow
run: |
export NXF_VER="20.07.1"
wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/
# Test the module
- run: nextflow run ./software/picard/markduplicates/test/ -profile docker

30
.github/workflows/picard_mergesamfiles.yml vendored Normal file
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name: picard_mergesamfiles
on:
push:
paths:
- software/picard/mergesamfiles/**
- .github/workflows/picard_mergesamfiles.yml
- tests
pull_request:
paths:
- software/picard/mergesamfiles/**
- .github/workflows/picard_mergesamfiles.yml
- tests
jobs:
ci_test:
runs-on: ubuntu-latest
env:
NXF_ANSI_LOG: false
steps:
- uses: actions/checkout@v2
- name: Install Nextflow
run: |
export NXF_VER="20.07.1"
wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/
# Test the module
- run: nextflow run ./software/picard/mergesamfiles/test/ -profile docker