From b2a8464e3ee06397e85f697e9b792cfafe1fad85 Mon Sep 17 00:00:00 2001
From: WackerO <43847497+WackerO@users.noreply.github.com>
Date: Mon, 11 Jul 2022 16:17:54 +0200
Subject: [PATCH] This updates the fgbio container version (#1863)

* This updates the fgbio container version

* Also updated conda install command
---
 modules/fgbio/fastqtobam/main.nf | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/modules/fgbio/fastqtobam/main.nf b/modules/fgbio/fastqtobam/main.nf
index 329aff33..51b6b72c 100644
--- a/modules/fgbio/fastqtobam/main.nf
+++ b/modules/fgbio/fastqtobam/main.nf
@@ -2,10 +2,10 @@ process FGBIO_FASTQTOBAM {
     tag "$meta.id"
     label 'process_low'
 
-    conda (params.enable_conda ? "bioconda::fgbio=1.4.0" : null)
+    conda (params.enable_conda ? "bioconda::fgbio=2.0.2" : null)
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/fgbio:1.4.0--hdfd78af_0' :
-        'quay.io/biocontainers/fgbio:1.4.0--hdfd78af_0' }"
+        'https://depot.galaxyproject.org/singularity/fgbio:2.0.2--hdfd78af_0' :
+        'quay.io/biocontainers/fgbio:2.0.2--hdfd78af_0' }"
 
     input:
     tuple val(meta), path(reads)