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fix: update to gatk4.2.0.0 (#575)

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* fix: update to gatk4.2.0.0

* fix: update md5sum
This commit is contained in:
Maxime U. Garcia 2021-07-16 11:26:28 +02:00 committed by GitHub
parent d624336cc1
commit b3c4667732
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2 changed files with 4 additions and 4 deletions
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6
modules/gatk4/splitncigarreads/main.nf
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@ -11,11 +11,11 @@ process GATK4_SPLITNCIGARREADS {
mode: params.publish_dir_mode, mode: params.publish_dir_mode,
saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) } saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) }
conda (params.enable_conda ? 'bioconda::gatk4=4.1.9.0' : null) conda (params.enable_conda ? "bioconda::gatk4=4.2.0.0" : null)
if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
container 'https://depot.galaxyproject.org/singularity/gatk4:4.1.9.0--py39_0' container "https://depot.galaxyproject.org/singularity/gatk4:4.2.0.0--0"
} else { } else {
container 'quay.io/biocontainers/gatk4:4.1.9.0--py39_0' container "quay.io/biocontainers/gatk4:4.2.0.0--0"
} }
input: input:

2
tests/modules/gatk4/splitncigarreads/test.yml
View file

@ -5,4 +5,4 @@
- gatk4/splitncigarreads - gatk4/splitncigarreads
files: files:
- path: output/gatk4/test.bam - path: output/gatk4/test.bam
md5sum: 900af0f67749d5ffac961354178ecb29 md5sum: 8d05a41f9467e62d3fc1bc725f0869ec